From cb98aedcaa2cc162fe5defca734a8b66faf388a3 Mon Sep 17 00:00:00 2001
From: Egon Willighagen <egon.willighagen@gmail.com>
Date: Tue, 2 Apr 2019 10:04:39 +0200
Subject: [PATCH 1/6] Added template for BioSchemas Tool annotation

Uses BioSchemas Tool 0.3-DRAFT (21 November 2018), see http://bioschemas.org/devSpecs/Tool/
---
 layouts/_bioc_views_package_detail.html | 13 +++++++++++++
 1 file changed, 13 insertions(+)

diff --git a/layouts/_bioc_views_package_detail.html b/layouts/_bioc_views_package_detail.html
index 1221b19a9..c5b784456 100644
--- a/layouts/_bioc_views_package_detail.html
+++ b/layouts/_bioc_views_package_detail.html
@@ -2,6 +2,19 @@ <h1><%=@package[:Package]%></h1>
 
   <% if current? @package %>
 
+<script type="application/ld+json">
+{
+  "@context":"http://schema.org/",
+  "@type":"Tool",
+  "name":"<%=@package[:Package]%>",
+  "description":"<%= @package[:Description]%>",
+  "url":[
+    "<%=get_short_url(@package)%>"
+  ],
+  "softwareVersion":"<%= @package[:Version]%>"
+}
+</script>
+
     <% tr = TableRower.new %>
 
     <table border="0">

From 1b52b0930ce1bc2f11d43a1eee01aa6c3090f571 Mon Sep 17 00:00:00 2001
From: Egon Willighagen <egon.willighagen@gmail.com>
Date: Tue, 28 Jan 2020 21:26:27 +0100
Subject: [PATCH 2/6] Added the license info

---
 layouts/_bioc_views_package_detail.html | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/layouts/_bioc_views_package_detail.html b/layouts/_bioc_views_package_detail.html
index c5b784456..6f9175d9c 100644
--- a/layouts/_bioc_views_package_detail.html
+++ b/layouts/_bioc_views_package_detail.html
@@ -11,6 +11,10 @@ <h1><%=@package[:Package]%></h1>
   "url":[
     "<%=get_short_url(@package)%>"
   ],
+  "license":[{
+    @type:"CreativeWork",
+    "name":"<%=@package[:License]%>"
+  }],
   "softwareVersion":"<%= @package[:Version]%>"
 }
 </script>

From a449fdc1cd44bbe7c864e56f8fd8d5ddea431fc4 Mon Sep 17 00:00:00 2001
From: Egon Willighagen <egon.willighagen@gmail.com>
Date: Tue, 28 Jan 2020 21:37:41 +0100
Subject: [PATCH 3/6] Updated/fixed the package version number

---
 layouts/_bioc_views_package_detail.html | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/layouts/_bioc_views_package_detail.html b/layouts/_bioc_views_package_detail.html
index 6f9175d9c..ba528cef4 100644
--- a/layouts/_bioc_views_package_detail.html
+++ b/layouts/_bioc_views_package_detail.html
@@ -15,7 +15,7 @@ <h1><%=@package[:Package]%></h1>
     @type:"CreativeWork",
     "name":"<%=@package[:License]%>"
   }],
-  "softwareVersion":"<%= @package[:Version]%>"
+  "softwareVersion":"<%= @package[:version_num]%>"
 }
 </script>
 

From 49fd995fd64450900a5583c2daf45226b58ab929 Mon Sep 17 00:00:00 2001
From: Egon Willighagen <egon.willighagen@gmail.com>
Date: Tue, 28 Jan 2020 21:48:10 +0100
Subject: [PATCH 4/6] Added static content the same for all packages

---
 layouts/_bioc_views_package_detail.html | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/layouts/_bioc_views_package_detail.html b/layouts/_bioc_views_package_detail.html
index ba528cef4..2bdece342 100644
--- a/layouts/_bioc_views_package_detail.html
+++ b/layouts/_bioc_views_package_detail.html
@@ -6,6 +6,12 @@ <h1><%=@package[:Package]%></h1>
 {
   "@context":"http://schema.org/",
   "@type":"Tool",
+  "provider":[{
+    "@type"="Organization",
+    "name"="Bioconductor",
+    "url"="https://bioconductor.org/",
+  }],
+  "programmingLanguage":"R",
   "name":"<%=@package[:Package]%>",
   "description":"<%= @package[:Description]%>",
   "url":[

From 5199058ce9c22aad3fec1f5f9900502b6f8c21d8 Mon Sep 17 00:00:00 2001
From: Egon Willighagen <egon.willighagen@gmail.com>
Date: Tue, 28 Jan 2020 21:48:33 +0100
Subject: [PATCH 5/6] Added downloadUrl and discussionUrl

---
 layouts/_bioc_views_package_detail.html | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/layouts/_bioc_views_package_detail.html b/layouts/_bioc_views_package_detail.html
index 2bdece342..1547c42ed 100644
--- a/layouts/_bioc_views_package_detail.html
+++ b/layouts/_bioc_views_package_detail.html
@@ -17,11 +17,15 @@ <h1><%=@package[:Package]%></h1>
   "url":[
     "<%=get_short_url(@package)%>"
   ],
+  "downloadUrl":[
+    "<%=get_short_url(@package)%>"
+  ],
   "license":[{
     @type:"CreativeWork",
     "name":"<%=@package[:License]%>"
   }],
-  "softwareVersion":"<%= @package[:version_num]%>"
+  "softwareVersion":"<%= @package[:version_num]%>",
+  "discussionUrl":["https://support.bioconductor.org/t/<%=@package[:Package].downcase%>/"]
 }
 </script>
 

From 8bc340fa060579244b5e4dbdaeef7455a1fbfb07 Mon Sep 17 00:00:00 2001
From: Egon Willighagen <egon.willighagen@gmail.com>
Date: Tue, 28 Jan 2020 21:57:02 +0100
Subject: [PATCH 6/6] Some syntax fixes (sorry)

---
 layouts/_bioc_views_package_detail.html | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/layouts/_bioc_views_package_detail.html b/layouts/_bioc_views_package_detail.html
index 1547c42ed..d86948f46 100644
--- a/layouts/_bioc_views_package_detail.html
+++ b/layouts/_bioc_views_package_detail.html
@@ -7,9 +7,9 @@ <h1><%=@package[:Package]%></h1>
   "@context":"http://schema.org/",
   "@type":"Tool",
   "provider":[{
-    "@type"="Organization",
-    "name"="Bioconductor",
-    "url"="https://bioconductor.org/",
+    "@type":"Organization",
+    "name":"Bioconductor",
+    "url":"https://bioconductor.org/"
   }],
   "programmingLanguage":"R",
   "name":"<%=@package[:Package]%>",
@@ -21,7 +21,7 @@ <h1><%=@package[:Package]%></h1>
     "<%=get_short_url(@package)%>"
   ],
   "license":[{
-    @type:"CreativeWork",
+    "@type":"CreativeWork",
     "name":"<%=@package[:License]%>"
   }],
   "softwareVersion":"<%= @package[:version_num]%>",