Merge pull request #41 from J35P312/master

minor fixes

Author: J35P312

TIDDIT.py

@@ -1,8 +1,9 @@
+#!/usr/bin/env python
 import argparse
 import os
 import TIDDIT_clustering
 
-version = "2.0.1"
+version = "2.0.3"
 parser = argparse.ArgumentParser("""TIDDIT-{}""".format(version),add_help=False)
 parser.add_argument('--sv'       , help="call structural variation", required=False, action="store_true")
 parser.add_argument('--cov'        , help="generate a coverage bed file", required=False, action="store_true")

src/TIDDIT.cpp

@@ -45,7 +45,7 @@ int main(int argc, char **argv) {
 	float insertStd;
 	int min_variant_size= 100;
 	string outputFileHeader ="output";
-	string version = "2.0.1";
+	string version = "2.0.3";
 
 	//collect all options as a vector
 	vector<string> arguments(argv, argv + argc);

src/data_structures/Translocation.cpp

@@ -64,8 +64,8 @@ string Window::VCFHeader(string libraryData){
 	headerString+="##INFO=<ID=ORSR,Number=2,Type=Integer,Description=\"Orientation of the split reads (inverted,normal)\">\n";
 	headerString+="##INFO=<ID=CIPOS,Number=2,Type=Integer,Description=\"Confidence interval around POS for imprecise variants\">\n";
 	headerString+="##INFO=<ID=CIEND,Number=2,Type=Integer,Description=\"Confidence interval around END for imprecise variants\">\n";
-	headerString+="##INFO=<ID=EL,Number=1,Type=Float,Description=\"Expected links to window B\">\n";
-	headerString+="##INFO=<ID=EL2,Number=1,Type=Float,Description=\"Expected links to window B\">\n";
+	headerString+="##INFO=<ID=E1,Number=1,Type=Float,Description=\"Expected links to window B\">\n";
+	headerString+="##INFO=<ID=E2,Number=1,Type=Float,Description=\"Expected links to window B(assuming ideal window length)\">\n";
 	headerString+="##INFO=<ID=QUALA,Number=1,Type=Float,Description=\"The average mapping quality of the reads in window A\">\n";
 	headerString+="##INFO=<ID=QUALB,Number=1,Type=Float,Description=\"The average mapping quality of the reads in window B\">\n";
 	//set filters