Param Revamp - ALRI

[mmsuarezcosta]

COMPLETED, but LINTING ERROR -- WORKING THROUGH THIS!!

Files

Deleted

• Calculations.csv, Lazzerini CFR.csv, and Pathogen_specific.csv were not in use and have been deleted

Parameters

Note: There is discrepancy between the write-up and the parameter values on the CSV file (parameters names, list, values, ...)

Dummy/Assumed

I am documenting the following parameters in the CSV file that have been either marked as dummy or assumed : prob_lung_abscess_in_pulmonary_complicated_pneumonia, prob_pneumothorax_in_pulmonary_complicated_pneumonia, prob_cough_in_other_alri, prob_difficult_breathing_in_other_alri, prob_chest_indrawing_in_other_alri, prob_danger_signs_in_sepsis, prob_iCCM_severe_pneumonia_treated_as_fast_breathing_pneumonia, prob_IMCI_severe_pneumonia_treated_as_non_severe_pneumonia

Local v. Universal

• Any proportion has been defined as local, and any probability (parameter with prefix with prob) has been defined as universal. A recommended exercise will be to revisit to prob parameters and determine if any are local-specific
• All treatment failure parameters (prefixed with tf) are assumed to be based on the true effect of the drug treatment, not on any location-specific factors (eg drug adherence) and thus are deemed to be universal.

[mmsuarezcosta]

@marghe-molaro ready for review