policy error 

Resource should not be [] it is string , that causes user not access the resource
{
  "principalId": "user",
  "policyDocument": {
    "Version": "2012-10-17",
    "Statement": [
      {
        "Action": "execute-api:Invoke",
        "Effect": "Deny",
        "Resource": "arn:aws:execute-api:us-west-2:123456789012:ymy8tbxw7b/*/GET/"
      }
    ]
  }
}