Update bactopia-to-md.py

Author: rpetit3

bin/bactopia-to-md.py

@@ -122,8 +122,8 @@ def read_nextflow_config(nf_config):
     """   """
     config = {}
     with open(nf_config, 'rt') as nf_fh:
-        if "=" in line:
-            for line in nf_fh:
+        for line in nf_fh:
+            if "=" in line:
                 k,v = line.rstrip().split(' = ')
                 config[k] = nf_to_list(v) if v.startswith('[') else v
     return config