diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 888929e..665fe5b 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -25,7 +25,7 @@ repos: args: [--allow-missing-credentials] - id: detect-private-key - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.12.8 + rev: v0.13.2 hooks: # Run the linter - id: ruff diff --git a/2025.rst b/2025.rst index 6b7e6ac..dfff7bd 100644 --- a/2025.rst +++ b/2025.rst @@ -133,12 +133,6 @@ Speakers :title: DIPY Release Manager :affiliation: Indiana University - .. workshop-speaker:: - :name: Shreyas Fadnavis - :image: Fadnavis.jpeg - :title: Principal AI Engineer - :affiliation: Hologic, Inc. - .. workshop-speaker:: :name: Bramsh Qamar Chandio :image: Chandio.jpeg diff --git a/2026.rst b/2026.rst new file mode 100644 index 0000000..4a99783 --- /dev/null +++ b/2026.rst @@ -0,0 +1,754 @@ +.. meta:: + :description: The 2026 Dipy Workshop is a 5-day event focused on diffusion MRI, featuring expert speakers and hands-on sessions. + :keywords: Dipy, Workshop, Diffusion MRI, Neuroimaging, Tractography + +.. title:: Dipy Workshop 2026 + +.. workshop-home:: + :year: 2026 + :codename: Online Edition + :reg_start_date: 2025-10-01 00:00 + :start_date: 2026-03-16 09:00 + :end_date: 2026-03-20 17:00 + :location: Online + :team_location: Bloomington, IN + + .. workshop-home-slide:: https://github.com/dipy/dipy_data/blob/master/dw2025bg1_Fl4pT1X.png?raw=true + :alt: dw_2025_bg_1 + + .. workshop-home-slide:: https://github.com/dipy/dipy_data/blob/master/dw2025b2.png?raw=true + :alt: dw_2025_bg_2 + + .. workshop-home-slide:: https://github.com/dipy/dipy_data/blob/master/dw2025bg3_4H3Ag9O.png?raw=true + :alt: dw_2025_bg_3 + +##### +About +##### + +.. workshop-about:: + :template: _templates/about_template.html + :watermark_image_url: _static/images/dipy-watermark.svg + :note_name: DIPY Team + + Attention grads, researchers, physicists, radiologists, doctors and technicians interested in medical imaging! Join us for an exciting online workshop hosted by DIPY. Our comprehensive program is designed to equip you with the skills and knowledge needed to master the latest techniques and tools in structural and diffusion imaging. + Our team of expert instructors will guide you through the fundamentals of diffusion theory, data pre-processing, fiber tracking, and much more. You'll have the opportunity to learn from industry-leading professionals, ask questions, and network with like-minded peers. + Whether you're new to diffusion imaging or an experienced practitioner, this workshop is perfect for you. Our curriculum is tailored to meet the needs of individuals at all levels of expertise. Don't miss this chance to enhance your skills and advance your career. + Register today to secure your spot in this highly anticipated event. We can't wait to see you in the event! + +######## +Speakers +######## + +.. workshop-speakers:: + :template: _templates/speaker_template.html + + .. workshop-speaker:: + :name: Eleftherios Garyfallidis + :image: garyfallidis.jpg + :title: Chair, DIPY Founder & Lead Developer + :affiliation: Associate Professor, Indiana University + + .. workshop-speaker:: + :name: Ariel Rokem + :image: rokem.jpg + :title: Associate DIPY Lead, eScience Institute + :affiliation: Research Associate Professor, University of Washington, Seattle + + .. workshop-speaker:: + :name: Rafael Neto Henriques + :image: henriques.jpeg + :title: Postdoctoral Researcher + :affiliation: Champalimaud Centre for the Unknown, PT + + .. workshop-speaker:: + :name: Wei Tang + :image: wei.jpeg + :title: Research Scientist + :affiliation: Indiana University + + .. workshop-speaker:: + :name: Serge Koudoro + :image: serge.png + :title: DIPY Release Manager + :affiliation: Indiana University + + .. workshop-speaker:: + :name: Bramsh Qamar Chandio + :image: Chandio.jpeg + :title: Postdoctoral Scholar + :affiliation: University of Southern California + + .. workshop-speaker:: + :name: Maharshi Gor + :image: maharshi.jpeg + :title: Research Associate + :affiliation: Indiana University + + .. workshop-speaker:: + :name: Sreekar Chigurupati + :image: sreekar.jpeg + :title: PhD Student + :affiliation: Indiana University + + .. workshop-speaker:: + :name: Jong Sung Park + :image: jspark.jpeg + :title: PhD Student + :affiliation: Indiana University + + .. workshop-speaker:: + :name: Aziza Saber Jabdaragh + :image: Aziza.jpeg + :title: PhD Student + :affiliation: Indiana University + + .. workshop-speaker:: + :name: Mohamed Abouagour + :image: Mohamed.jpg + :title: PhD Student + :affiliation: Indiana University + + .. workshop-speaker:: + :name: Atharva Shah + :image: atharva.png + :title: PhD Student + :affiliation: Indiana University + + +--------------------- +Conference Management +--------------------- +.. workshop-speakers:: + :template: _templates/speaker_template.html + + .. workshop-speaker:: + :name: Sai Prajwal Reddy + :image: Prajwal.jpeg + :title: PhD Student + :affiliation: Indiana University + + .. workshop-speaker:: + :name: Kaustav Deka + :image: Kaustav.png + :title: Graduate Student + :affiliation: Indiana University + +----------------- +Participants from +----------------- + +.. participants:: + :template: _templates/participants_template.html + + .. participant-item:: + :name: École Polytechnique Fédérale de Lausanne + :image: EPFL.png + :url: https://www.epfl.ch/en/ + + .. participant-item:: + :name: University of Pennsylvania + :image: UPENN.png + :url: https://www.upenn.edu/ + + .. participant-item:: + :name: University of Utah + :image: UTHA.png + :url: https://www.utah.edu/ + + .. participant-item:: + :name: Boston University School of Medicine + :image: BUSM.jpeg + :url: https://www.bumc.bu.edu/busm/ + + .. participant-item:: + :name: Emory University + :image: EMORY.png + :url: https://www.emory.edu/ + + .. participant-item:: + :name: Indiana University School of Medicine + :image: IUSM.png + :url: https://medicine.iu.edu/ + + .. participant-item:: + :name: Ludwig-Maximilians-Universität München + :image: LU.png + :url: https://www.uni-muenchen.de/ + + .. participant-item:: + :name: Centre for Addiction and Mental Health + :image: CAMH.jpg + :url: https://www.camh.ca/ + + .. participant-item:: + :name: University of Sherbrooke + :image: USHER.png + :url: https://www.usherbrooke.ca/ + + .. participant-item:: + :name: Harvard University + :image: HARVARD.png + :url: https://www.harvard.edu/ + + .. participant-item:: + :name: Massachusetts Institute of Technology + :image: MIT.png + :url: https://www.mit.edu/ + + .. participant-item:: + :name: Icahn School of Medicine at Mount Sinai + :image: MSINAI.png + :url: https://icahn.mssm.edu/ + + .. participant-item:: + :name: University of Wisconsin–Madison + :image: MWISCONSIN.png + :url: https://www.wisc.edu/ + + .. participant-item:: + :name: Johns Hopkins University + :image: JHOPKINS.png + :url: https://www.jhu.edu/ + + .. participant-item:: + :name: University of Chicago + :image: UCHICAGO.png + :url: https://www.uchicago.edu/ + + .. participant-item:: + :name: Duke University + :image: DUKE.jpeg + :url: https://www.duke.edu/ + + .. participant-item:: + :name: Mind Research Network + :image: THEMINDRESNET.jpeg + :url: https://mindresearchnetwork.org/ + + .. participant-item:: + :name: Houston Methodist Research Institute + :image: HMRI.jpeg + :url: https://www.houstonmethodist.org/research/ + + .. participant-item:: + :name: University of Washington + :image: UW.jpeg + :url: https://www.washington.edu/ + + .. participant-item:: + :name: University of California, Berkeley + :image: UCB.png + :url: https://www.berkeley.edu/ + + .. participant-item:: + :name: University of California, San Diego + :image: UCSD.png + :url: https://www.ucsd.edu/ + + .. participant-item:: + :name: Penn Medicine (University of Pennsylvania Health System) + :image: PENNMED.png + :url: https://www.pennmedicine.org/ + + .. participant-item:: + :name: University of Arizona + :image: UARIZONA.png + :url: https://www.arizona.edu/ + + .. participant-item:: + :name: Dell Medical School at The University of Texas at Austin + :image: DELLMEDSCHOOL.png + :url: https://dellmed.utexas.edu/ + + .. participant-item:: + :name: Indiana University–Purdue University Indianapolis + :image: IUPUI.png + :url: https://www.iupui.edu/ + + +--------------------- +Special Thanks +--------------------- + +.. grid:: 4 + :gutter: 5 + + .. grid-item:: + + .. grid-item-card:: + :img-background: _static/images/universities/GRG.png + :img-alt: Garyfallidis Research Group (GRG) + :link: https://grg.luddy.indiana.edu/ + :text-align: center + + .. grid-item-card:: + :img-background: _static/images/universities/ISE.jpeg + :img-alt: Intelligent Systems Engineering (IU) + :link: https://engineering.indiana.edu/index.html + :text-align: center + + + +Multiple speakers including **Garyfallidis, Landman and Harezlak** are funded by the +`National Institutes of Health `_. + +#### +Why? +#### + +.. workshop-why:: + :template: _templates/why_template.html + :subtitle: Here are a few reasons why attending the DIPY MR Imaging workshop is essential + + .. workshop-why-item:: + :title: Hands-on experience + + The workshop offers a hands-on learning experience, which is essential for learning how to use MR imaging techniques and software effectively. The practical sessions provide attendees with the opportunity to work on real-world problems and gain valuable experience in the field. + + .. workshop-why-item:: + :title: Expert instructors + + The workshop is led by expert instructors who have extensive experience in MR imaging and DIPY software. They provide valuable insights and expertise, which is essential for staying up-to-date with the latest advancements in this rapidly evolving field. + + .. workshop-why-item:: + :title: Networking opportunities + + The workshop provides an excellent opportunity for attendees to network with other professionals in the field. This can lead to collaborations and the sharing of knowledge and expertise, which is critical for advancing research in the field. + + .. workshop-why-item:: + :title: Access to the latest technology + + The DIPY workshop provides access to the latest software for analyzing and processing MR imaging data. This ensures that attendees are working with the most advanced technology available, which can lead to more accurate and efficient analysis of data. + + .. workshop-why-item:: + :title: Deep understanding of the theory behind the methods + + The topics covered need a solid understanding of the models, theory and math. For this reason, all tutorials will be provided at four levels :
+ a) Theory
+ b) Algorithms/Methods
+ c) Code/Interfaces
+ d) Clinical Application Examples. + + +########## +Highlights +########## + +.. carousel:: + :template: _templates/swipe_carousel.html + + .. carousel-item:: + :image: https://raw.githubusercontent.com/dipy/dipy_data/master/tractometry.png?raw=true + :title: Advanced tractometry + :description: Advanced techniques in tractography for diffusion MRI. + + .. carousel-item:: + :image: https://raw.githubusercontent.com/dipy/dipy_data/master/wrapping_bundles.png?raw=true + :title: Warping of bundles + :description: Techniques for warping and aligning bundles in diffusion MRI. + + .. carousel-item:: + :image: https://raw.githubusercontent.com/dipy/dipy_data/master/illuminating_lines.png?raw=true + :title: Cinematic visualization + :description: Cinematic techniques for visualizing diffusion MRI data. + + .. carousel-item:: + :image: https://raw.githubusercontent.com/dipy/dipy_data/master/preprocess.png?raw=true + :title: State-of-the-art preprocessing + :description: Advanced preprocessing techniques for diffusion MRI data. + + .. carousel-item:: + :image: https://raw.githubusercontent.com/dipy/dipy_data/master/brain-extraction.png?raw=true + :title: Accurate brain extraction + :description: Techniques for accurate brain extraction in diffusion MRI. + + .. carousel-item:: + :image: https://raw.githubusercontent.com/dipy/dipy_data/master/generative_approach.png?raw=true + :title: Generative approaches for missing data + :description: Techniques for generative modeling of missing data in diffusion MRI. + + + + +######## +Schedule +######## + +.. workshop-schedule:: + + .. workshop-timeline:: + :title: Day 1 + :subtitle: Preprocessing + :date: 2026-03-16 + :template: _templates/schedule_template.html + + .. workshop-timeline-item:: + :time: 09:00 - 09:45 + :title: Workshop Overview + :speaker: Eleftherios Garyfallidis + :image: garyfallidis.jpg + + .. workshop-timeline-item:: + :time: 10:00 - 10:45 + :title: Keynote: TBA + :speaker: TBA + :image: dipy-all.svg + + .. workshop-timeline-item:: + :time: 11:00 - 11:45 + :title: Introduction to DIPY Interfaces + :speaker: Serge Koudoro + :image: serge.png + + .. workshop-timeline-item:: + :time: 12:00 - 12:45 + :title: Lunch Break + + .. workshop-timeline-item:: + :time: 13:00 - 13:45 + :title: TBA + :speaker: TBA + :image: dipy-all.svg + + .. workshop-timeline-item:: + :time: 14:00 - 14:45 + :title: Brain Extraction and Tissue Classification + :speaker: Jong Sung Park + :image: jspark.jpeg + + .. workshop-timeline-item:: + :time: 15:00 - 15:45 + :title: Image-based Registration + :speaker: Serge Koudoro + :image: serge.png + + .. workshop-timeline-item:: + :time: 16:00 - 16:45 + :title: Distortion Correction + :speaker: Sreekar Chigurupati + :image: sreekar.jpeg + + .. workshop-timeline-item:: + :time: 17:00 - 17:45 + :title: Denoising with Patch2Self3 + :speaker: Sai Prajwal Reddy + :image: Prajwal.jpeg + + .. workshop-timeline-item:: + :time: 18:00 - 18:30 + :title: Study Group Sessions + :speaker: All + :image: dipy-all.svg + + .. workshop-timeline:: + :title: Day 2 + :subtitle: Reconstruction + :date: 2025-03-17 + :template: _templates/schedule_template.html + + .. workshop-timeline-item:: + :time: 09:00 - 09:45 + :title: Keynote: TBA + :speaker: TBA + :image: dipy-all.svg + + .. workshop-timeline-item:: + :time: 10:00 - 10:45 + :title: Guided Practice + :speaker: Serge Koudoro + :image: serge.png + + .. workshop-timeline-item:: + :time: 11:00 - 11:45 + :title: Diffusion Tensor and Kurtosis Imaging + :speaker: Atharva Shah + :image: atharva.png + + .. workshop-timeline-item:: + :time: 12:00 - 12:45 + :title: Lunch Break + + .. workshop-timeline-item:: + :time: 13:00 - 13:45 + :title: Spherical Harmonic Reconstruction + :speaker: Eleftherios Garyfallidis + :image: garyfallidis.jpg + + .. workshop-timeline-item:: + :time: 14:00 - 14:45 + :title: Model-based Quantification of Microstructural Properties from Diffusion MRI + :speaker: Rafael Henriques + :image: henriques.jpeg + + .. workshop-timeline-item:: + :time: 15:00 - 15:45 + :title: Advanced Diffusion MRI Sequences for Microstructural Quantification + :speaker: Rafael Henriques + :image: henriques.jpeg + + .. workshop-timeline-item:: + :time: 16:00 - 16:45 + :title: Fractal Dimensions for Segmentation + :speaker: Aziza Saber Jabdaragh + :image: Aziza.jpeg + + .. workshop-timeline-item:: + :time: 17:00 - 17:45 + :title: WebGPU Mayhem + :speaker: Maharshi Gor + :image: maharshi.jpeg + + .. workshop-timeline-item:: + :time: 18:00 - 18:30 + :title: E-Posters (Present your work) + :speaker: All + :image: dipy-all.svg + + .. workshop-timeline:: + :title: Day 3 + :subtitle: Tractography + :date: 2025-03-18 + :template: _templates/schedule_template.html + + .. workshop-timeline-item:: + :time: 09:00 - 09:45 + :title: TBA + :speaker: TBA + :image: dipy-all.svg + + .. workshop-timeline-item:: + :time: 10:00 - 10:45 + :title: Introduction to computational neuroanatomy + :speaker: Wei Tang + :image: wei.jpeg + + .. workshop-timeline-item:: + :time: 11:00 - 11:45 + :title: Tractography: Principles, Methods and the New Fast Tracking API + :speaker: Gabriel Girard + :image: girard.png + + .. workshop-timeline-item:: + :time: 12:00 - 12:45 + :title: Lunch Break + + .. workshop-timeline-item:: + :time: 13:00 - 13:45 + :title: Keynote: TBA + :speaker: TBA + :image: dipy-all.svg + + .. workshop-timeline-item:: + :time: 14:00 - 14:45 + :title: Tractography Segmentation + :speaker: Mohamed Abouagour + :image: Mohamed.jpg + + .. workshop-timeline-item:: + :time: 15:00 - 15:45 + :title: Tractography-based Registration + :speaker: Bramsh Qamar Chandio + :image: Chandio.jpeg + + .. workshop-timeline-item:: + :time: 16:00 - 16:45 + :title: Guided Practice + :speaker: Serge Koudoro + :image: serge.png + + .. workshop-timeline-item:: + :time: 17:00 - 17:45 + :title: E-Posters + :speaker: All + :image: dipy-all.svg + + .. workshop-timeline:: + :title: Day 4 + :subtitle: Tractometry + :date: 2025-03-19 + :template: _templates/schedule_template.html + + .. workshop-timeline-item:: + :time: 09:00 - 09:45 + :title: Keynote: TBA + :speaker: TBA + :image: dipy-all.svg + + .. workshop-timeline-item:: + :time: 10:00 - 10:45 + :title: Bundle Analytics + :speaker: Bramsh Qamar Chandio + :image: Chandio.jpeg + + .. workshop-timeline-item:: + :time: 11:00 - 11:45 + :title: Guided Practice + :speaker: Bramsh Qamar Chandio + :image: Chandio.jpeg + + .. workshop-timeline-item:: + :time: 12:00 - 12:45 + :title: Lunch Break + + .. workshop-timeline-item:: + :time: 13:00 - 13:45 + :title: New Frontiers in Bundle Analytics + :speaker: Ariel Rokem + :image: rokem.jpg + + .. workshop-timeline-item:: + :time: 14:00 - 14:45 + :title: Deep Learning for Tractography + :speaker: Jon Haitz Legarreta + :image: JHLegarreta.jpg + + .. workshop-timeline-item:: + :time: 15:00 - 15:45 + :title: Keynote : TBA + :speaker: TBA + :image: dipy-all.svg + + .. workshop-timeline-item:: + :time: 16:00 - 16:45 + :title: TBA + :speaker: TBA + :image: dipy-all.svg + + .. workshop-timeline-item:: + :time: 17:00 - 17:45 + :title: Study Group Sessions + :speaker: All + :image: dipy-all.svg + + .. workshop-timeline:: + :title: Day 5 + :subtitle: Mixed Topics + :date: 2025-03-20 + :template: _templates/schedule_template.html + + .. workshop-timeline-item:: + :time: 09:00 - 09:45 + :title: Keynote: TBA + :speaker: TBA + :image: dipy-all.svg + + .. workshop-timeline-item:: + :time: 10:00 - 10:45 + :title: Demo Session + :speaker: All + :image: dipy-all.svg + + .. workshop-timeline-item:: + :time: 11:00 - 11:45 + :title: Keynote: TBA + :speaker: TBA + :image: dipy-all.svg + + .. workshop-timeline-item:: + :time: 12:00 - 12:45 + :title: Lunch Break + + .. workshop-timeline-item:: + :time: 13:00 - 13:45 + :title: TBA + :speaker: TBA + :image: dipy-all.svg + + .. workshop-timeline-item:: + :time: 14:00 - 14:45 + :title: TBA + :speaker: TBA + :image: dipy-all.svg + + .. workshop-timeline-item:: + :time: 15:00 - 15:45 + :title: TBA + :speaker: TBA + :image: dipy-all.svg + + .. workshop-timeline-item:: + :time: 16:00 - 16:45 + :title: Final Assembly + :speaker: TBA + :image: dipy-all.svg + + +############ +Registration +############ +Get the Early Birds Discount before 3rd January 2026. + +.. pricing-list:: + :template: _templates/pricing_template.html + :title: One Price for all to get you started + :subtitle: Get the most of the workshop with easy pricing, no hidden fees. + + .. pricing-item:: + :name: Students, Academic, Professionals + :currency: $ + :price: 500 + :discount: 650 + :registration_link: https://iubgrg-fireform.eas.iu.edu/online/form/index/grgdw2026 + + - One price for all + - Listen to the talks live. + - Learn from the experts. + - Basic kit for diffusion imaging. + - Attend Study Groups. + - Present your work. + - Complete 5 days of workshop + - LinkedIn verifiable certificate. + + .. pricing-item:: + :name: Returning Participants + :currency: $ + :price: 250 + :discount: 300 + :registration_link: https://iubgrg-fireform.eas.iu.edu/online/form/index/grgdw2026 + + - Listen to the talks live. + - Learn from the experts. + - Basic kit for diffusion imaging. + - Attend Study Groups. + - Present your work. + - Complete 5 days of workshop + - LinkedIn verifiable certificate. + + +.. pricing-list:: + :template: _templates/pricing_template.html + :title: Optional Packages + :subtitle: Need more flexibility? Check out our optional packages. + + .. pricing-item:: + :name: Recording Access + :currency: $ + :price: 250 + :discount: 350 + :registration_link: https://iubgrg-fireform.eas.iu.edu/online/form/index/grgdw2026 + + - Only accessible if you register for the workshop. + - Access to talks during and after the workshop. + - Access to materials during and after the workshop. + + .. pricing-item:: + :name: Coaching Package + :currency: $ + :price: 500 + :discount: 750 + :registration_link: https://iubgrg-fireform.eas.iu.edu/online/form/index/grgdw2026 + + - Only accessible if you register for the workshop. + - Deep Dive into your data and project with expert guidance. + - Up to 3 one-hour 1:1 with DIPY developers. + - A Discount Year-long support option available. + + +####### +Contact +####### + +Contact us for more information by sending an email at workshop@dipy.org + +or joining our forum at https://github.com/dipy/dipy/discussions diff --git a/conf.py b/conf.py index a68b6ca..bc56502 100644 --- a/conf.py +++ b/conf.py @@ -83,6 +83,7 @@ "workshops/dipy-workshop-2023": "../2023.html", "workshops/dipy-workshop-2024": "../2024.html", "workshops/dipy-workshop-2025": "../2025.html", + "workshops/dipy-workshop-2026": "../2026.html", "dipy-workshop-2019": "2019.html", "dipy-workshop-2020": "2020.html", "dipy-workshop-2021": "2021.html", @@ -90,6 +91,7 @@ "dipy-workshop-2023": "2023.html", "dipy-workshop-2024": "2024.html", "dipy-workshop-2025": "2025.html", + "dipy-workshop-2026": "2026.html", } diff --git a/index.rst b/index.rst index 248df5e..d4c6d61 100644 --- a/index.rst +++ b/index.rst @@ -880,6 +880,7 @@ or joining our forum at https://github.com/dipy/dipy/discussions .. toctree:: :hidden: + 2026.rst 2025.rst 2024.rst 2023.rst