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PipEngine will generate runnable shell scripts, already configured for the PBS/Torque job scheduler, for each sample in the pipeline. It allows to run a complete pipeline or just a single step depending on the needs.
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PipEngine is best suited for NGS pipelines, but it can be used for any kind of pipeline that can be runned on a job scheduling system and that are "sample" centric, i.e. you have from one side a list of samples with their corresponding raw data, and from the other side a pipeline that you would like to apply to them.
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PipEngine is best suited for NGS pipelines, but it can be used for any kind of pipeline that can be runned on a job scheduling system and which is "sample" centric, i.e. you have from one side a list of samples with their corresponding raw data, and from the other side a pipeline that you would like to apply to them.
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