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lines changed Original file line number Diff line number Diff line change @@ -14,12 +14,14 @@ before_install:
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- export PLANEMO_CONDA_PREFIX="$HOME/conda"
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install :
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- # html5lib (planemo dep) requires setuptools >= 18.5
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- - pip install -q flake8 planemo
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- - planemo conda_init
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- - export PATH="$PLANEMO_CONDA_PREFIX/bin:$PATH"
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- - conda create -y -q -c bioconda --name iuc_conda samtools=0.1.19 bcftools
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- - . activate iuc_conda
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+ - pip install --upgrade setuptools
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+ - pip install -q click==5.1
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+ - pip install -q planemo
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+ - planemo conda_init --conda_prefix $CONDA_PREFIX
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+ - export PATH=$CONDA_PREFIX/bin:$PATH
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+ - conda install -y -q conda=3.19.3
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+ - conda create -y -q -c bioconda --name iuc_conda numpy==1.9.2 samtools bcftools
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+ - source activate iuc_conda
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- planemo --version
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- conda --version
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- echo $TRAVIS_COMMIT_RANGE
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