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test quality boxplot
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tool_collections/fastx_toolkit/fastq_quality_boxplot/fastq_quality_boxplot.xml

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<tool id="cshl_fastq_quality_boxplot" name="Draw quality score boxplot" version="1.0.0">
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<description></description>
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<requirements>
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<requirement type="package" version="0.0.13">fastx_toolkit</requirement>
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</requirements>
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<command>fastq_quality_boxplot_graph.sh -t '$input.name' -i $input -o $output</command>
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<requirement type="package" version="0.0.14">fastx_toolkit</requirement>
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</requirements>
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<command>
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fastq_quality_boxplot_graph.sh -t '$input.name' -i '$input' -o '$output'
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</command>
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<inputs>
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<param format="txt" name="input" type="data" label="Statistics report file" help="output of 'FASTQ Statistics' tool" />
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</inputs>
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<outputs>
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<data format="png" name="output" metadata_source="input" />
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</outputs>
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.. __: http://hannonlab.cshl.edu/fastx_toolkit/
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</help>
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<!-- FASTQ-Quality-Boxplot is part of the FASTX-toolkit, by A.Gordon ([email protected]) -->
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</help>
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</tool>

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