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lines changed Original file line number Diff line number Diff line change @@ -15,12 +15,11 @@ before_install:
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install :
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- pip install flake8 planemo
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- planemo conda_init
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- - export PATH="$PLANEMO_CONDA_PREFIX/bin:$PATH"
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- - conda update -y conda
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- - conda create -y -q -c bioconda --name iuc_conda samtools=0.1.19 bcftools
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- - . activate iuc_conda
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+ - $PLANEMO_CONDA_PREFIX/bin/conda update -y conda
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+ - $PLANEMO_CONDA_PREFIX/bin/conda create -y -q -c bioconda --name iuc_conda samtools=0.1.19 bcftools
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+ - . $PLANEMO_CONDA_PREFIX/bin/activate iuc_conda
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- planemo --version
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- - conda --version
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+ - $PLANEMO_CONDA_PREFIX/bin/ conda --version
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- git diff --quiet "$TRAVIS_COMMIT_RANGE" -- ; GIT_DIFF_EXIT_CODE=$?
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- |
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if [ "$GIT_DIFF_EXIT_CODE" -gt 1 ] ; then
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