test documentation docstrings

Author: fabianp

.github/workflows/tests.yml

@@ -64,8 +64,8 @@ jobs:
           set -xe
           pip install --upgrade pip setuptools wheel
           pip install -r docs/requirements.txt
-      - name: Build documentation
+      - name: Test examples and docstrings
         run: |
           set -xe
           python -VV
-          cd docs && make clean && make html
+          make doctest

docs/Makefile

@@ -3,16 +3,16 @@
 
 # You can set these variables from the command line, and also
 # from the environment for the first two.
-SPHINXOPTS    ?=
 SPHINXBUILD   ?= sphinx-build
 SOURCEDIR     = .
 BUILDDIR      = _build
+SPHINXOPTS    = -d $(BUILDDIR)/doctrees -T
 
 # Put it first so that "make" without argument is like "make help".
 help:
 	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
 
-.PHONY: help Makefile
+.PHONY: help Makefile doctest
 
 # Catch-all target: route all unknown targets to Sphinx using the new
 # "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
@@ -25,6 +25,11 @@ clean:
 	rm -rf _autosummary/
 
 html-noplot:
-	$(SPHINXBUILD) -D plot_gallery=0 -D jupyter_execute_notebooks=off -b html $(ALLSPHINXOPTS) $(SOURCEDIR) $(BUILDDIR)/html
+	$(SPHINXBUILD) -D plot_gallery=0 -D jupyter_execute_notebooks=off -b html $(SPHINXOPTS) $(SOURCEDIR) $(BUILDDIR)/html
 	@echo
 	@echo "Build finished. The HTML pages are in $(BUILDDIR)/html."
+
+doctest:
+	$(SPHINXBUILD) -b doctest $(SPHINXOPTS) . $(BUILDDIR)/doctest
+	@echo "Testing of doctests in the sources finished, look at the " \
+	      "results in $(BUILDDIR)/doctest/output.txt."

docs/conf.py

@@ -50,13 +50,14 @@
     'sphinx.ext.napoleon', # napoleon on top of autodoc: https://stackoverflow.com/a/66930447 might correct some warnings
     'sphinx.ext.autodoc',
     'sphinx.ext.autosummary',
+    'sphinx.ext.doctest',
     'sphinx.ext.intersphinx',
     'sphinx.ext.mathjax',
     'sphinx.ext.viewcode',
     'matplotlib.sphinxext.plot_directive',
     'sphinx_autodoc_typehints',
     'myst_nb',
-    "sphinx_remove_toctrees",
+    'sphinx_remove_toctrees',
     'sphinx_rtd_theme',
     'sphinx_gallery.gen_gallery',
     'sphinx_copybutton',
@@ -70,7 +71,12 @@
      "backreferences_dir": os.path.join("modules", "generated"),
 }
 
+# Specify how to identify the prompt when copying code snippets
+copybutton_prompt_text = r">>> |\.\.\. "
+copybutton_prompt_is_regexp = True
+copybutton_exclude = "style"
 
+trim_doctests_flags = True
 source_suffix = ['.rst', '.ipynb', '.md']
 
 autosummary_generate = True