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update with pubs
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Gemfile

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# gem "jekyll", "~> 3.8.7"
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group :jekyll_plugins do
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gem "github-pages"
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gem "jekyll-scholar"
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end

Gemfile.lock

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zeitwerk (~> 2.2, >= 2.2.2)
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addressable (2.7.0)
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public_suffix (>= 2.0.2, < 5.0)
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bibtex-ruby (4.4.7)
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latex-decode (~> 0.0)
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citeproc (1.0.10)
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namae (~> 1.0)
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citeproc-ruby (1.1.13)
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citeproc (~> 1.0, >= 1.0.9)
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csl (~> 1.5)
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coffee-script (2.4.1)
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coffee-script-source
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execjs
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commonmarker (0.17.13)
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ruby-enum (~> 0.5)
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concurrent-ruby (1.1.7)
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csl (1.5.2)
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namae (~> 1.0)
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csl-styles (1.0.1.10)
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csl (~> 1.0)
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dnsruby (1.61.4)
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simpleidn (~> 0.1)
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em-websocket (0.5.1)
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rubyzip (>= 1.3.0)
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jekyll-sass-converter (1.5.2)
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sass (~> 3.4)
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jekyll-scholar (5.16.0)
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bibtex-ruby (~> 4.0, >= 4.0.13)
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citeproc-ruby (~> 1.0)
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csl-styles (~> 1.0)
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jekyll (~> 3.0)
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jekyll-seo-tag (2.6.1)
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jekyll (>= 3.3, < 5.0)
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jekyll-sitemap (1.4.0)
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rexml
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kramdown-parser-gfm (1.1.0)
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kramdown (~> 2.0)
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latex-decode (0.3.2)
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liquid (4.0.3)
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listen (3.2.1)
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rb-fsevent (~> 0.10, >= 0.10.3)
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jekyll-seo-tag (~> 2.1)
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minitest (5.14.1)
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multipart-post (2.1.1)
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namae (1.1.1)
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nokogiri (1.10.10)
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mini_portile2 (~> 2.4.0)
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octokit (4.18.0)
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DEPENDENCIES
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github-pages
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jekyll-scholar
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BUNDLED WITH
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2.1.4

_bibliography/pubs.bib

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---
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---
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@inproceedings{hoover.j:2020,
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abstract = {Icelandic dative-nominative constructions exhibit a syntactic hierarchy effect known as the Person Restriction: only third person nominatives may control agreement. In these constructions, there is variation between speakers in the extent to which the verb agrees with the nominative for number. Sigurðsson & Holmberg (2008) explain this variation as arising due to differences between varieties in the timing of subject raising, using a split phi-probe. This paper revises their approach, using the feature gluttony mechanism for Agree developed in Coon & Keine (2020), and a split phi-probe in which person probing precedes number probing. Within this framework, the observed variation can be captured by allowing variability two independent parameters: the timing of EPP subject raising, and the visibility of a number feature on dative DPs. The proposed mechanism describes the variation, including predicting the observed optional agreement in certain cases that previous literature had struggled to account for, and makes additional predictions about the differences between varieties in cases of syncretism within the verbal paradigm. An investigation into these predictions should allow this already well-studied area of Icelandic grammar to continue to be a useful test-case for crosslinguistic assumptions about the mechanism of Agree, and the status of dative arguments.},
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address = {Somerville, Mass., USA},
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author = {Jacob Louis Hoover},
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booktitle = {Proceedings of the 38th West Coast Conference on Formal Linguistics},
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editor = {Daniel Reisinger and Rachel Soo},
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publisher = {Cascadilla Proceedings Project},
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pubstate = {forthcoming},
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title = {Accounting for variation in number agreement in Icelandic dative--nominative constructions},
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year = {2020},
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pdf = {wccfl2020-icelandic_gluttony-proceedings.pdf},
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handout= {doi.org/10.14288/1.0389856}}
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@misc{hoover.j:2021,
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abstract = {What is the relationship between linguistic dependencies and statistical dependence? Building on earlier work in NLP and cognitive science, we study this question. We introduce a contextualized version of pointwise mutual information (CPMI), using pretrained language models to estimate probabilities of words in context. Extracting dependency trees which maximize CPMI, we compare the resulting structures against gold dependencies. Overall, we find that these maximum-CPMI trees correspond to linguistic dependencies more often than trees extracted from non-contextual PMI estimate, but only roughly as often as a simple baseline formed by connecting adjacent words. We also provide evidence that the extent to which the two kinds of dependency align cannot be explained by the distance between words or by the category of the dependency relation. Finally, our analysis sheds some light on the differences between large pretrained language models, specifically in the kinds of inductive biases they encode.},
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archiveprefix = {arXiv},
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author = {Jacob Louis Hoover and Alessandro Sordoni and Wenyu Du and Timothy J. O'Donnell},
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eprint = {2104.08685},
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primaryclass = {cs.CL},
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title = {Linguistic dependencies and statistical dependence},
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year = {2021}}

_config.yml

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# Build settings
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markdown: kramdown
2020

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scholar:
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# style: apa
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locale: en
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sort_by: year
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order: descending
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# group_by: year
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# group_order: descending
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# type_names: { article: Papers }
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source: /_bibliography
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bibliography: default.bib
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bibliography_template: bib # references file _layouts/bib.*
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# USE THE FOLLOWING FOR MATH:
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# $$\LaTeX code$$ (for display)
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# \\[\LaTeX code\\] (also for display)

_includes/head.html

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<link rel="stylesheet" href="{{ "/css/main.css" | prepend: site.baseurl }}">
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<link rel="canonical" href="{{ page.url | replace:'index.html','' | prepend: site.baseurl | prepend: site.url }}">
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<link rel="alternate" type="application/rss+xml" title="{{ site.title }}" href="{{ "/feed.xml" | prepend: site.baseurl | prepend: site.url }}">
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</head>

_layouts/bib.html

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---
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---
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{% if entry.abbr %}
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{% if site.data.venues[entry.abbr] %}
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<abbr>[<a href="{{site.data.venues[entry.abbr].url}}" target="_blank">{{entry.abbr}}</a>]</abbr>
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{% else %}
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<abbr>[{{entry.abbr}}]</abbr>
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{% endif %}
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{% endif %}
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<div id="{{entry.key}}">
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{% if entry.type == "thesis" %}
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{{reference}}
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{% else %}
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<span class="title">{{entry.title}}</span>
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<span class="author">
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{% for author in entry.author_array %}
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{% if forloop.length == 1 %}
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{{author.first}} {{author.last}}
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{% else %}
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{% unless forloop.last %}
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{{author.first}} {{author.last}},
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{% else %}
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and {{author.first}} {{author.last}}
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{% endunless %}
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{% endif %}
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{% endfor %}
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</span>
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<span class="howpublished">
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{% if entry.type == "article" %}
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<em>{{entry.journal}}</em>.
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{% elsif entry.type == "inproceedings" %}
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<em>{{entry.booktitle}}</em>.
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{% elsif entry.howpublished %}
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{{entry.howpublished}}.
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{% endif %}
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{% if entry.day %}
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{{entry.day}}
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{% endif %}
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{% if entry.month %}
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{{entry.month | capitalize }},
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{% endif %}
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{% if entry.year %}
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{{entry.year}}
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{% endif %}
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</span>
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{% endif %}
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<span class="links">
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{% if entry.doi %}
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[<a href="http://doi.org/{{ entry.doi }}" target="_blank">DOI</a>]
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{% endif %}
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{% if entry.archiveprefix and entry.eprint %}
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[<a href="http://arxiv.org/abs/{{ entry.eprint }}" target="_blank">arXiv</a>]
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{% endif %}
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{% if entry.arxiv %}
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[<a href="http://arxiv.org/abs/{{ entry.arxiv }}" target="_blank">arXiv</a>]
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{% endif %}
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{% if entry.lingbuzz %}
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[<a href="https://ling.auf.net/lingbuzz/{{ entry.lingbuzz }}" target="_blank">lingbuzz</a>]
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{% endif %}
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{% if entry.url %}
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[<a href="{{ entry.url }}" target="_blank">link</a>]
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{% endif %}
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{% if entry.preprint %}
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[<a href="{{ entry.preprint }}" target="_blank">preprint</a>]
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{% endif %}
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{% if entry.handout %}
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[<a href="{{ entry.handout }}" target="_blank">handout</a>]
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{% endif %}
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{% if entry.html %}
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[<a href="{{ entry.html }}" target="_blank">HTML</a>]
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{% endif %}
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{% if entry.pdf %}
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[<a href="{{ entry.pdf | prepend: '/assets/pdfs/' | prepend: site.baseurl | prepend: site.url }}" target="_blank">pdf</a>]
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{% endif %}
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{% if entry.poster %}
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[<a href="{{ entry.poster | prepend: '/assets/pdfs/' | prepend: site.baseurl | prepend: site.url }}" target="_blank">poster</a>]
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{% endif %}
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{% if entry.slides %}
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[<a href="{{ entry.slides | prepend: '/assets/pdfs/' | prepend: site.baseurl | prepend: site.url }}" target="_blank">slides</a>]
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{% endif %}
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{% if entry.code %}
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[<a href="{{ entry.code }}" target="_blank">code</a>]
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{% endif %}
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</span>
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{% if entry.abstract %}
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<details>
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<summary>abstract</summary>
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<div class="content">
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<p>{{ entry.abstract }}</p>
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</div>
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</details>
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{% endif %}
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</div>

_layouts/default.html

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{% include header.html %}
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{% include clojure-preamble.html %}
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</body>
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<script src="https://code.jquery.com/jquery-3.3.1.min.js"></script>
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<!-- Load Common JS (for custom things like abstract hidden / open) -->
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<script src="{{ '/assets/js/common.js' | prepend: site.baseurl | prepend: site.url }}"></script>
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</html>
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_layouts/page.html

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<h1 class="post-title">{{ page.title }}</h1>
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</header>
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<div class="post-content">
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<div class="page-container">
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</div>
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_layouts/post.html

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layout: default
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<article class="post" itemscope itemtype="http://schema.org/BlogPosting">
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_posts/2019-10-03-klipse-clojure.md

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tags: note
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---
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<!-- The following preamble (in /_includes/) is needed for the Vega stuff -->
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{% include clojure-preamble.html %}
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The Clojure code for rendering the visualizations (with [Vega](https://vega.github.io/vega/)) in this post is [here](https://github.com/jahoo/jahoo.github.io/blob/master/_includes/clojure-preamble.html).
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## Using Klipse for code blocks

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