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johnbachmanjohnbachman
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Merge pull request #154 from steppi/covid_grounding_3
Covid grounding 3
2 parents 072cda0 + d35103f commit ac46201

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-13
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7 files changed

+37
-13
lines changed

‎entities.csv‎

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@@ -612,6 +612,7 @@ S100
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S100A
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S1PR
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SAA
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Sarcoglycan_complex
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SCD
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SCN
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SCNN

‎equivalences.csv‎

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@@ -1253,6 +1253,7 @@ MESH,D048049,ERK
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MESH,D048051,p38
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MESH,D048490,RAF
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MESH,D048948,p14_3_3
1256+
MESH,D049031,Sarcoglycan_complex
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MESH,D049368,LPAR
12571258
MESH,D050051,TRP
12581259
MESH,D050656,TFAP2

‎export/famplex.belns‎

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@@ -2,8 +2,8 @@
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Keyword=FPLX
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NameString=FamPlex
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DomainString=Gene and Gene Products
5-
VersionString=20201006
6-
CreatedDateTime=2020-10-06T00:39:37
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VersionString=20201019
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CreatedDateTime=2020-10-19T11:08:06
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DescriptionString=FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships.
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QueryValueURL=http://identifiers.org/fplx/
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@@ -661,6 +661,7 @@ STAT|CGPR
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STAT5|CGPR
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STT3|CGPR
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SWI_SNF|CGPR
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Sarcoglycan_complex|CGPR
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Sodium_channels|CGPR
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Sodium_voltage_gated_channel_alpha_subunits|CGPR
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Sodium_voltage_gated_channel_beta_subunits|CGPR

‎export/famplex.obo‎

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@@ -1,5 +1,5 @@
11
format-version: 1.2
2-
date: 06:10:2020 00:39
2+
date: 19:10:2020 11:08
33

44
[Term]
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id: FPLX:5_hydroxytryptamine_receptors_G_protein_coupled
@@ -3227,11 +3227,7 @@ has_part: HGNC:DMD
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has_part: HGNC:DTNA
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has_part: HGNC:DTNB
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has_part: HGNC:NOS1
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has_part: HGNC:SGCA
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has_part: HGNC:SGCB
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has_part: HGNC:SGCD
3233-
has_part: HGNC:SGCE
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has_part: HGNC:SGCZ
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has_part: FPLX:Sarcoglycan_complex
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has_part: HGNC:SNTA1
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has_part: HGNC:SNTB1
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has_part: HGNC:SNTG1
@@ -10538,6 +10534,21 @@ inverse_is_a: HGNC:SAA1
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inverse_is_a: HGNC:SAA2
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inverse_is_a: HGNC:SAA4
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[Term]
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id: FPLX:Sarcoglycan_complex
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name: Sarcoglycan-complex
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synonym: "sarcoglycan" EXACT []
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synonym: "sarcoglycans" EXACT []
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synonym: "Sarcoglycan" EXACT []
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synonym: "Sarcoglycans" EXACT []
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xref: MESH:D049031
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part_of: FPLX:DGC
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has_part: HGNC:SGCA
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has_part: HGNC:SGCB
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has_part: HGNC:SGCD
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has_part: HGNC:SGCE
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has_part: HGNC:SGCZ
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[Term]
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id: FPLX:SCD
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name: SCD

‎export/famplex_groundings.tsv‎

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@@ -2145,6 +2145,9 @@ SWI/SNF SWI_SNF fplx Family
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SWI/SNF complex SWI_SNF fplx Family
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SWI/SNF-like SWI_SNF fplx Family
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SYNJ2 O15056 uniprot Gene_or_gene_product
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Sarcoglycan Sarcoglycan_complex fplx Family
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Sarcoglycan-complex Sarcoglycan_complex fplx Family
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Sarcoglycans Sarcoglycan_complex fplx Family
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Se CHEBI:27568 chebi Simple_chemical
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Shc SHC fplx Family
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Shc family SHC fplx Family
@@ -3288,6 +3291,8 @@ rutin CHEBI:28527 chebi Simple_chemical
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s6k P70S6K fplx Family
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sGC SGC fplx Family
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salt inducible kinase SIK fplx Family
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sarcoglycan Sarcoglycan_complex fplx Family
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sarcoglycans Sarcoglycan_complex fplx Family
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sarcoplasmic/endoplasmic reticulum calcium ATPase SERCA fplx Family
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senescence GO:0090398 go BioProcess
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serine/threonine protein kinase CK1 CSNK1 fplx Family

‎grounding_map.csv‎

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@@ -3058,3 +3058,7 @@ interferon induced transmembrane protein,FPLX,IFITM,,,,
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interferon induced transmembrane proteins,FPLX,IFITM,,,,
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large tumor suppressor kinase,FPLX,LATS,,,,
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large tumor suppressor kinases,FPLX,LATS,,,,
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sarcoglycan,FPLX,Sarcoglycan_complex,,,,
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sarcoglycans,FPLX,Sarcoglycan_complex,,,,
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Sarcoglycan,FPLX,Sarcoglycan_complex,,,,
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Sarcoglycans,FPLX,Sarcoglycan_complex,,,,

‎relations.csv‎

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@@ -2014,11 +2014,12 @@ HGNC,DMD,partof,FPLX,DGC
20142014
HGNC,DTNA,partof,FPLX,DGC
20152015
HGNC,DTNB,partof,FPLX,DGC
20162016
HGNC,NOS1,partof,FPLX,DGC
2017-
HGNC,SGCA,partof,FPLX,DGC
2018-
HGNC,SGCB,partof,FPLX,DGC
2019-
HGNC,SGCD,partof,FPLX,DGC
2020-
HGNC,SGCE,partof,FPLX,DGC
2021-
HGNC,SGCZ,partof,FPLX,DGC
2017+
HGNC,SGCA,partof,FPLX,Sarcoglycan_complex
2018+
HGNC,SGCB,partof,FPLX,Sarcoglycan_complex
2019+
HGNC,SGCD,partof,FPLX,Sarcoglycan_complex
2020+
HGNC,SGCE,partof,FPLX,Sarcoglycan_complex
2021+
HGNC,SGCZ,partof,FPLX,Sarcoglycan_complex
2022+
FPLX,Sarcoglycan_complex,partof,FPLX,DGC
20222023
HGNC,SNTA1,partof,FPLX,DGC
20232024
HGNC,SNTB1,partof,FPLX,DGC
20242025
HGNC,SNTG1,partof,FPLX,DGC

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