Release minimap2-2.1.1 (r341)

Author: lh3

NEWS.md

@@ -1,3 +1,26 @@
+Release 2.1.1-r341 (6 September 2017)
+-------------------------------------
+
+This is a maintenance release that is expected to output identical alignment to
+v2.1. Detailed changes include:
+
+ * Support CPU dispatch. By default, minimap2 is compiled with both SSE2 and
+   SSE4 based implementation of alignment and automatically chooses the right
+   one at runtime. This avoids unexpected errors on older CPUs (#21).
+
+ * Improved Windows support as is requested by Oxford Nanopore (#19). Minimap2
+   now avoids variable-length stacked arrays, eliminates alloca(), ships with
+   getopt_long() and provides timing functions implemented with Windows APIs.
+
+ * Fixed a potential segmentation fault when specifying -k/-w/-H with
+   multi-part index (#23).
+
+ * Fixed two memory leaks in example.c
+
+(2.1.1: 6 September 2017, r341)
+
+
+
 Release 2.1-r311 (25 August 2017)
 ---------------------------------
 

main.c

@@ -6,7 +6,7 @@
 #include "mmpriv.h"
 #include "getopt.h"
 
-#define MM_VERSION "2.1-r339-dirty"
+#define MM_VERSION "2.1.1-r341"
 
 #ifdef __linux__
 #include <sys/resource.h>

minimap2.1

@@ -1,4 +1,4 @@
-.TH minimap2 1 "25 August 2017" "minimap2-2.1-r311" "Bioinformatics tools"
+.TH minimap2 1 "6 September 2017" "minimap2-2.1.1-r341" "Bioinformatics tools"
 .SH NAME
 .PP
 minimap2 - mapping and alignment between collections of DNA sequences