Merge pull request #63 from linkml/finish_poetry

add commands for jsonschema translator to pyproject.toml

Author: sierra-moxon

CHANGELOG.md

@@ -20,7 +20,7 @@ tool
 
 ## Installation
 
-`linkml-model-enrichment` and its components require Python 3.9 or greater.
+`schema-automator` and its components require Python 3.9 or greater.
 
 ```bash
 chmod 755 environment.sh
@@ -158,3 +158,8 @@ Options:
   -o, --output TEXT  output path
   --help             Show this message and exit.
 ```
+
+### jsonschema2linkml example
+```bash
+poetry run jsonschema2linkml -n test-model -f yaml -o vrs-linkml.yaml cp tests/resources/jsonschema/vrs.schema.json
+```

README.md

@@ -43,10 +43,13 @@ requires = ["poetry-core>=1.0.0"]
 build-backend = "poetry.core.masonry.api"
 
 [tool.poetry.scripts]
-tsv2linkml = "linkml_model_enrichment.importers.csv_import_engine:tsv2model"
-owl2linkml = "linkml_model_enrichment.importers.owl_import_engine:owl2model"
-enum_annotator = "linkml_model_enrichment.annotators.enum_annotator:enum_annotator"
-enums_to_curateable = "linkml_model_enrichment.annotators.enums_to_curateable:enums_to_curateable"
-curated_to_enums = "linkml_model_enrichment.annotators.curated_to_enums:curated_to_enums"
-
+tsv2linkml = "schema_automator.importers.csv_import_engine:tsv2model"
+enum_annotator = "schema_automator.annotators.enum_annotator:enum_annotator"
+enums_to_curateable = "schema_automator.annotators.enums_to_curateable:enums_to_curateable"
+curated_to_enums = "schema_automator.annotators.curated_to_enums:curated_to_enums"
+rdf2linkml = "schema_automator.importers.rdf_instance_import_engine:rdf2model"
+owl2linkml = "schema_automator.importers.owl_import_engine:owl2model"
+dosdp2linkml = "schema_automator.importers.owl_import_engine:dosdp2model"
+jsondata2linkml = "schema_automator.importers.json_instance_import_engine:json2model"
+jsonschema2linkml = "schema_automator.importers.jsonschema_import_engine:jsonschema2model"
 

pre_poetry/test_combined_tsv_enum.py

@@ -57,6 +57,7 @@ def test_convert_vrs(self):
         """Test JSONSchema conversion."""
         schema = self._convert('vrs.schema', 'json')
 
+
     def test_phenopackets(self):
         schema = self._convert('phenopackets.schema', 'json',
                                name='phenopackets',