Merge branch 'develop' into latexify_eqcm

Author: medha-14

.github/workflows/benchmark_on_push.yml

@@ -24,7 +24,7 @@ jobs:
         with:
           persist-credentials: false
       - name: Set up Python 3.12
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
 

.github/workflows/docker.yml

@@ -39,7 +39,7 @@ jobs:
 
 
       - name: Build and push Docker image to Docker Hub
-        uses: docker/build-push-action@471d1dc4e07e5cdedd4c2171150001c434f0b7a4 # v6.15.0
+        uses: docker/build-push-action@14487ce63c7a62a4a324b0bfb37086795e31c6c1 # v6.16.0
         with:
           context: .
           file: scripts/Dockerfile

.github/workflows/periodic_benchmarks.yml

@@ -33,7 +33,7 @@ jobs:
           persist-credentials: false
 
       - name: Set up Python 3.12
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
 
@@ -70,7 +70,7 @@ jobs:
       contents: write
     steps:
       - name: Set up Python 3.12
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
 
@@ -85,7 +85,7 @@ jobs:
           persist-credentials: false
 
       - name: Download results artifact(s)
-        uses: actions/download-artifact@95815c38cf2ff2164869cbab79da8d1f422bc89e # v4.2.1
+        uses: actions/download-artifact@d3f86a106a0bac45b974a628896c90dbdf5c8093 # v4.3.0
         with:
           path: results
           merge-multiple: true

.github/workflows/publish_pypi.yml

@@ -16,7 +16,7 @@ jobs:
       - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
         with:
           persist-credentials: true
-      - uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+      - uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
 
@@ -39,7 +39,7 @@ jobs:
 
     steps:
       - name: Download artifacts
-        uses: actions/download-artifact@95815c38cf2ff2164869cbab79da8d1f422bc89e # v4.2.1
+        uses: actions/download-artifact@d3f86a106a0bac45b974a628896c90dbdf5c8093 # v4.3.0
         with:
           path: deploy
           merge-multiple: true

.github/workflows/run_benchmarks_over_history.yml

@@ -41,7 +41,7 @@ jobs:
         with:
           persist-credentials: false
       - name: Set up Python 3.12
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
 
@@ -132,7 +132,7 @@ jobs:
       contents: write
     steps:
       - name: Set up Python 3.12
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
 
@@ -147,7 +147,7 @@ jobs:
           persist-credentials: false
 
       - name: Download results artifact(s)
-        uses: actions/download-artifact@ea165f8d65b6e75b540449e92b4886f43607fa02 # v4.6.2
+        uses: actions/download-artifact@d3f86a106a0bac45b974a628896c90dbdf5c8093 # v4.6.2
         with:
           name: asv_over_history_results
           path: results

.github/workflows/run_periodic_tests.yml

@@ -66,7 +66,7 @@ jobs:
         run: choco install graphviz --version=8.0.5
 
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: ${{ matrix.python-version }}
 
@@ -86,7 +86,7 @@ jobs:
 
       - name: Upload coverage report
         if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12'
-        uses: codecov/codecov-action@0565863a31f2c772f9f0395002a31e3f06189574 # v5.4.0
+        uses: codecov/codecov-action@ad3126e916f78f00edff4ed0317cf185271ccc2d # v5.4.2
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
 
@@ -115,7 +115,7 @@ jobs:
           sudo apt-get install texlive-latex-extra dvipng
 
       - name: Set up Python
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.11
 
@@ -152,7 +152,7 @@ jobs:
           sudo apt-get install libopenblas-dev texlive-latex-extra dvipng
 
       - name: Set up Python 3.12
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
 
@@ -186,7 +186,7 @@ jobs:
           sudo apt-get install libopenblas-dev texlive-latex-extra dvipng
 
       - name: Set up Python 3.12
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
 

.github/workflows/scorecard.yml

@@ -65,6 +65,6 @@ jobs:
       # Upload the results to GitHub's code scanning dashboard (optional).
       # Commenting out will disable upload of results to your repo's Code Scanning dashboard
       - name: "Upload to code-scanning"
-        uses: github/codeql-action/upload-sarif@1b549b9259bda1cb5ddde3b41741a82a2d15a841 # v3.28.13
+        uses: github/codeql-action/upload-sarif@28deaeda66b76a05916b6923827895f2b14ab387 # v3.28.16
         with:
           sarif_file: results.sarif

.github/workflows/test_on_push.yml

@@ -28,7 +28,7 @@ jobs:
         with:
           persist-credentials: false
       - name: Setup Python
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
 
@@ -93,7 +93,7 @@ jobs:
 
       - name: Set up Python ${{ matrix.python-version }}
         id: setup-python
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: ${{ matrix.python-version }}
           cache: 'pip'
@@ -114,7 +114,7 @@ jobs:
 
       - name: Upload coverage report
         if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12'
-        uses: codecov/codecov-action@0565863a31f2c772f9f0395002a31e3f06189574 # v5.4.0
+        uses: codecov/codecov-action@ad3126e916f78f00edff4ed0317cf185271ccc2d # v5.4.2
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
 
@@ -152,7 +152,7 @@ jobs:
 
       - name: Set up Python
         id: setup-python
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.11
           cache: 'pip'
@@ -198,7 +198,7 @@ jobs:
 
       - name: Set up Python 3.12
         id: setup-python
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
           cache: 'pip'
@@ -241,7 +241,7 @@ jobs:
 
       - name: Set up Python 3.12
         id: setup-python
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
           cache: 'pip'

.pre-commit-config.yaml

@@ -4,7 +4,7 @@ ci:
 
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: "v0.11.2"
+    rev: "v0.11.7"
     hooks:
       - id: ruff
         args: [--fix, --show-fixes]
@@ -44,7 +44,7 @@ repos:
         - id: sp-repo-review
 
   - repo: https://github.com/woodruffw/zizmor-pre-commit
-    rev: v1.5.2
+    rev: v1.6.0
     hooks:
       - id: zizmor
         args: [--pedantic]

CHANGELOG.md

@@ -1,5 +1,40 @@
 # [Unreleased](https://github.com/pybamm-team/PyBaMM/)
 
+## Optimizations
+
+- Add a solver option to change `on_extrapolation` behavior to `"error"`, `"warn"`, or `"ignore"` on extrapolation events. ([#4993](https://github.com/pybamm-team/PyBaMM/pull/4993))
+- Improve reliability of `CasadiAlgebraicSolver` and added an option for the `step_tol` of the Newton iteration. ([#4985](https://github.com/pybamm-team/PyBaMM/pull/4985))
+- Speed up calculation of variable sensitivities in `ProcessedVariable` ([#5000](https://github.com/pybamm-team/PyBaMM/pull/5000))
+
+## Bug fixes
+
+- Fixed a bug in the `QuickPlot` which would return empty values for 1D variables at the beginning and end of a timespan. ([#4991](https://github.com/pybamm-team/PyBaMM/pull/4991))
+- Fixed a bug in the `Exponential1DSubMesh` where the mesh was not being created correctly for non-zero minimum values. ([#4989](https://github.com/pybamm-team/PyBaMM/pull/4989))
+
+## Breaking changes
+
+- Remove sensitivity functionality for Casadi and Scipy solvers, only `pybamm.IDAKLU` solver can calculate sensitivities. ([#4975](https://github.com/pybamm-team/PyBaMM/pull/4975))
+
+# [v25.4.2](https://github.com/pybamm-team/PyBaMM/tree/v25.4.2) - 2025-04-17
+
+## Bug fixes
+
+- Improve reliability of `AlgebraicSolver` and change `ElectrodeSOHHalfCell` solver to a Trust-Region method. ([#4982](https://github.com/pybamm-team/PyBaMM/pull/4982))
+
+# [v25.4.1](https://github.com/pybamm-team/PyBaMM/tree/v25.4.1) - 2025-04-16
+
+## Features
+
+- Added "use lumped thermal capacity" option in lumped thermal model ([#4968](https://github.com/pybamm-team/PyBaMM/pull/4968))
+
+## Bug fixes
+
+- Remove a regularization term in the harmonic mean. ([#4977](https://github.com/pybamm-team/PyBaMM/pull/4977))
+
+## Breaking changes
+
+- Changed default solver to `pybamm.IDAKLUSolver`. ([#4915](https://github.com/pybamm-team/PyBaMM/pull/4915))
+
 # [v25.4.0](https://github.com/pybamm-team/PyBaMM/tree/v25.4.0) - 2025-04-02
 
 ## Features