make release-tag: Merge branch 'main' into stable

Author: sarahmish

.github/workflows/tests.yml

@@ -28,7 +28,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        python-version: [3.7, 3.8]
+        python-version: ["3.8", "3.9", "3.10", "3.11"]
         os: [ubuntu-latest, macos-latest]
     steps:
     - uses: actions/checkout@v1
@@ -37,40 +37,40 @@ jobs:
       with:
         python-version: ${{ matrix.python-version }}
     - name: Install package and dependencies
-      run: pip install rundoc .
+      run: pip install invoke rundoc .
     - name: make test-readme
       run: make test-readme
 
   unit:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        python-version: [3.7, 3.8]
-        os: [ubuntu-latest, macos-latest]
+        python-version: ["3.8", "3.9", "3.10", "3.11"]
+        os: [ubuntu-latest, macos-latest, windows-latest]
     steps:
     - uses: actions/checkout@v1
     - name: Set up Python ${{ matrix.python-version }}
       uses: actions/setup-python@v2
       with:
         python-version: ${{ matrix.python-version }}
     - name: Install package and dependencies
-      run: pip install .[test]
+      run: pip install invoke .[test]
     - name: make test-unit
       run: make test-unit
 
   tutorials:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        python-version: [3.7, 3.8]
-        os: [ubuntu-latest, macos-latest]
+        python-version: ["3.8", "3.9", "3.10", "3.11"]
+        os: [ubuntu-latest, macos-latest, windows-latest]
     steps:
     - uses: actions/checkout@v1
     - name: Set up Python ${{ matrix.python-version }}
       uses: actions/setup-python@v2
       with:
         python-version: ${{ matrix.python-version }}
     - name: Install package and dependencies
-      run: pip install .[test]
+      run: pip install invoke .[test]
     - name: make test-tutorials
       run: make test-tutorials

HISTORY.md

@@ -1,5 +1,13 @@
 # History
 
+## 0.0.3 - 2024-03-12
+
+SigPro supporting python 3.9, 3.10, and 3.11
+
+* add gearbox_replace_presence labeling function - [Issue #21](https://github.com/signals-dev/Zephyr/issues/21) by @SaraPido
+* Update python versions - [Issue #20](https://github.com/signals-dev/Zephyr/issues/20) by @SaraPido
+
+
 ## 0.0.2 - 2023-05-09
 
 SigPro integration for processing signals

Makefile

@@ -84,8 +84,7 @@ install-develop: clean-build clean-pyc ## install the package in editable mode a
 
 .PHONY: lint
 lint: ## check style with flake8 and isort
-	flake8 zephyr_ml tests
-	isort -c --recursive zephyr_ml tests
+	invoke lint
 
 .PHONY: fix-lint
 fix-lint: ## fix lint issues using autoflake, autopep8, and isort
@@ -97,21 +96,15 @@ fix-lint: ## fix lint issues using autoflake, autopep8, and isort
 
 .PHONY: test-unit
 test-unit: ## run tests quickly with the default Python
-	python -m pytest --cov=zephyr_ml
+	invoke pytest
 
 .PHONY: test-readme
 test-readme: ## run the readme snippets
-	rm -rf tests/readme_test && mkdir -p tests/readme_test/notebooks
-	cp -r notebooks/data tests/readme_test/notebooks/
-	cd tests/readme_test && rundoc run --single-session python3 -t python3 ../../README.md
-	rm -rf tests/readme_test
-
+	invoke readme
 
 .PHONY: test-tutorials
 test-tutorials: ## run the tutorial notebooks
-	find notebooks -path "*/.ipynb_checkpoints" -prune -false -o -name "*.ipynb" -exec \
-		jupyter nbconvert --execute --ExecutePreprocessor.timeout=3600 --to=html --stdout {} > /dev/null \;
-
+	invoke tutorials
 
 .PHONY: test
 test: test-unit test-readme test-tutorials ## test everything that needs test dependencies
@@ -223,7 +216,7 @@ endif
 check-release: check-main check-history ## Check if the release can be made
 
 .PHONY: release
-release: check-release bumpversion-release docker-push publish bumpversion-patch
+release: check-release bumpversion-release publish bumpversion-patch
 
 .PHONY: release-candidate
 release-candidate: check-main publish bumpversion-candidate