Lab Software

###Computer: Hummingbird ####OS: OS X (10.9.5) FastQC (0.11.2)

Trimmomatic (0.30)

Trinotate (Release 2014-07-08)

bedtools (2.22.1)

bismark (0.14.2)

bowtie (1.0.0)

bowtie2 (2.1.0)

cufflinks (2.2.1.OSX_x86_64)

fastx_toolkit (0.0.13.2)

hmmer (3.1b1)

libgtextutils (0.6.1)

ncbi-blast (2.2.29+)

ngsplot (2.08)

rsem (1.2.10)

signalp (4.1)

stacks (1.13)

tophat (2.0.13.OSX_x86_64)

trinity (Release 2013-11-10)

ipython (3.0.0)

Geneious (5.3.6)

---

###Computer: RoadRunner/Ostrich ####OS: OS X (10.11.6) FastQC (0.11.5)

Trimmomatic (0.30)

Trinotate (3.0.1)

bedtools (2.26.0)

bismark (0.15.0)

bowtie (1.1.2)

bowtie2 (2.2.9)

cufflinks (2.2.1.OSX_x86_64)

hmmer (3.1b2)

ncbi-blast (2.5.0)

ngsplot (2.08)

rsem (1.3.0)

stacks (1.44)

tophat (2.1.1)

trinity (2.3.2)

---