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Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 369 156

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 25 15

Repositories

Showing 10 of 443 repositories
  • aibs-informatics-aws-lambda Public

    AWS Lambda library for AIBS Informatics lambda functions

    AllenInstitute/aibs-informatics-aws-lambda’s past year of commit activity
    Python 1 0 0 1 Updated Oct 15, 2025
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 29 9 261 11 Updated Oct 14, 2025
  • aind-smartspim-transform-utils Public Forked from AllenNeuralDynamics/aind-smartspim-transform-utils

    Package for transforming points between raw space and CCF space from the SmartSPIM light sheet pipeline

    AllenInstitute/aind-smartspim-transform-utils’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Oct 14, 2025
  • aibs-informatics-aws-utils Public

    Library of generic Python AWS utils used by the AIBS Informatics "Marmot" team

    AllenInstitute/aibs-informatics-aws-utils’s past year of commit activity
    Python 1 0 2 0 Updated Oct 14, 2025
  • neuroanalysis Public

    Modular analysis tools for neurophysiology data

    AllenInstitute/neuroanalysis’s past year of commit activity
    Python 9 MIT 11 1 1 Updated Oct 14, 2025
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder’s past year of commit activity
    TypeScript 17 BSD-3-Clause 4 75 2 Updated Oct 14, 2025
  • ipfx Public

    computes intrinsic cell features from intracellular electrophysiology data

    AllenInstitute/ipfx’s past year of commit activity
    Python 27 38 60 4 Updated Oct 14, 2025
  • neuron-proofreader Public

    NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

    AllenInstitute/neuron-proofreader’s past year of commit activity
    Python 6 MIT 0 0 0 Updated Oct 14, 2025
  • vis Public

    Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats

    AllenInstitute/vis’s past year of commit activity
    TypeScript 6 BSD-3-Clause 1 11 8 Updated Oct 13, 2025
  • ConnectsCommonConnectivity Public

    A repository to organize data models and code for creating a pilot common connectiivty matrix for BRAIN CONNECTS

    AllenInstitute/ConnectsCommonConnectivity’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 13, 2025
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