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@CDCgov

Centers for Disease Control and Prevention

CDC's collaborative software projects to protect America from health, safety, and security threats, both foreign and in the U.S.
README.md

CDCGov Organization

This is CDC's GitHub organization for collaborating on open source projects. More information on CDC's open collaboration projects is available at openCDC.

Check out our Open Source Practices and please suggest any ideas for improvement by sending a pull request.

Check out a portal of all the projects hosted in the CDCGov domain. (thanks to Tony Boyles)

If you would like to create a new project, please complete this form logging in with your CDC credentials.

If you would like to join the CDCGov organization, or would like to suggest some others to join, please drop an issue into the template repo.

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  1. cdcgov.github.io cdcgov.github.io Public

    Portal site for all CDCgov projects, https://cdcgov.github.io

    HTML 23 32

  2. template template Public template

    Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.

    38 49

Repositories

Showing 10 of 501 repositories
  • dibbs-ecr-refiner Public

    The DIBBs eCR Refiner reduces eICR and RR files down to only the most useful, necessary information to alleviate performance and storage burden on eCR data pipelines and disease surveillance systems and bring focus to pertinent data for a given reportable condition.

    CDCgov/dibbs-ecr-refiner’s past year of commit activity
    XSLT 3 Apache-2.0 3 41 5 Updated Oct 1, 2025
  • cfa-epinow2-pipeline Public
    CDCgov/cfa-epinow2-pipeline’s past year of commit activity
    R 12 Apache-2.0 6 43 6 Updated Oct 1, 2025
  • dibbs-FHIR-Converter Public Forked from microsoft/FHIR-Converter

    Conversion utility to translate legacy data formats into FHIR

    CDCgov/dibbs-FHIR-Converter’s past year of commit activity
    Liquid 5 MIT 199 26 3 Updated Oct 1, 2025
  • NowcastAutoGP Public

    Combining AutoGP (Gaussian process ensembles with kernel structure discovery) with data revisions

    CDCgov/NowcastAutoGP’s past year of commit activity
    Julia 5 Apache-2.0 0 5 4 Updated Oct 1, 2025
  • cfa-cloudops Public
    CDCgov/cfa-cloudops’s past year of commit activity
    Python 2 Apache-2.0 1 8 0 Updated Oct 1, 2025
  • prime-reportstream Public

    ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.

    CDCgov/prime-reportstream’s past year of commit activity
    Kotlin 81 CC0-1.0 44 1,221 141 Updated Oct 1, 2025
  • phylophoenix Public

    🔥🌿🐦🔥PhyloPHoeNIx: Pipeline for relatedness determination using PHoeNIx output.

    CDCgov/phylophoenix’s past year of commit activity
    Python 7 Apache-2.0 0 3 1 Updated Oct 1, 2025
  • phoenix Public

    🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

    CDCgov/phoenix’s past year of commit activity
    Python 86 Apache-2.0 33 12 0 Updated Oct 1, 2025
  • rsv-forecast-hub Public

    A repository run by the Centers for Disease Control and Prevention (CDC) to collect forecasts of incident respiratory syncytial virus (RSV) hospital admissions and emergency department visits.

    CDCgov/rsv-forecast-hub’s past year of commit activity
    3 Apache-2.0 3 1 1 Updated Oct 1, 2025
  • hubhelpr Public
    CDCgov/hubhelpr’s past year of commit activity
    R 3 Apache-2.0 0 14 3 Updated Oct 1, 2025
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