CellProfiling
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HPA-competition-solutions
HPA-competition-solutions PublicTeam original solutions for the Human Protein Atlas image classification competition
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SingleCellProteogenomics
SingleCellProteogenomics PublicCell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model
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HPA-competition
HPA-competition PublicHuman Protein Atlas image classification competition
Repositories
- SubCellPortable Public
This is a convenient code wrapper to run Lundberg lab SubCell model in inference with your own images
CellProfiling/SubCellPortable’s past year of commit activity - TifCs_To_HPA-PNG-JPEG Public
FIJI plugin that reads folders with single-channel tif files and outputs an identical file system with PNGs and JPEGs in HPA-Style.
CellProfiling/TifCs_To_HPA-PNG-JPEG’s past year of commit activity - seq2loc_benchmark Public
Code for "A comprehensive benchmark of sequence-based subcellular localization predictors for human proteins"
CellProfiling/seq2loc_benchmark’s past year of commit activity - Biomni_MCP Public
CellProfiling/Biomni_MCP’s past year of commit activity - Sp8-Lif_To_Memento Public
FIJI plugin that allows to read .lif files from Leica microscopes and outputs a file system with JPG files, PNGs, TIFs, or Multi-plane TIF stacks (for use in Memento or other tools).
CellProfiling/Sp8-Lif_To_Memento’s past year of commit activity - HPA_Cilia_Study_Code Public
Code underpinning data processing and analysis in the preprint https://www.biorxiv.org/content/10.1101/2024.10.20.619273.
CellProfiling/HPA_Cilia_Study_Code’s past year of commit activity - HPA_Convert_Sp8_To_OMETIF Public
CellProfiling/HPA_Convert_Sp8_To_OMETIF’s past year of commit activity
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