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@DataBiosphere

Data Biosphere

We are creating a vibrant ecosystem of interoperable modules and data environments for the biomedical community.

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  1. toil toil Public

    A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

    Python 925 244

  2. dsub dsub Public

    Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

    Python 275 47

  3. terra-ui terra-ui Public

    Web user interface for the Terra platform

    TypeScript 54 21

  4. leonardo leonardo Public

    Notebook service

    Scala 44 21

  5. terra-docker terra-docker Public

    Jupyter Notebook 32 34

  6. job-manager job-manager Public

    Job Manager API and UI for interacting with asynchronous batch jobs and workflows.

    TypeScript 27 5

Repositories

Showing 10 of 163 repositories
  • dsub Public

    Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

    DataBiosphere/dsub’s past year of commit activity
    Python 275 Apache-2.0 47 75 2 Updated Nov 20, 2025
  • azul Public

    Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP

    DataBiosphere/azul’s past year of commit activity
    Python 9 Apache-2.0 3 636 13 Updated Nov 20, 2025
  • duos-ui Public

    Broad Institute Data Use Oversight System

    DataBiosphere/duos-ui’s past year of commit activity
    JavaScript 10 BSD-3-Clause 4 0 4 Updated Nov 20, 2025
  • terra-ui Public

    Web user interface for the Terra platform

    DataBiosphere/terra-ui’s past year of commit activity
    TypeScript 54 BSD-3-Clause 21 145 1 Updated Nov 20, 2025
  • terra-resource-buffer Public

    Terra Resource Buffering Service

    DataBiosphere/terra-resource-buffer’s past year of commit activity
    Java 4 BSD-3-Clause 2 0 3 Updated Nov 20, 2025
  • toil Public

    A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

    DataBiosphere/toil’s past year of commit activity
    Python 925 Apache-2.0 244 392 5 Updated Nov 20, 2025
  • consent Public

    Broad Institute Data Use Oversight System

    DataBiosphere/consent’s past year of commit activity
    Java 11 BSD-3-Clause 2 0 3 Updated Nov 20, 2025
  • leonardo Public

    Notebook service

    DataBiosphere/leonardo’s past year of commit activity
    Scala 44 BSD-3-Clause 21 1 10 Updated Nov 19, 2025
  • terra-scientific-pipelines-service-cli Public
    DataBiosphere/terra-scientific-pipelines-service-cli’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 1 Updated Nov 19, 2025
  • consent-ontology Public

    Broad Institute Data Use Oversight System

    DataBiosphere/consent-ontology’s past year of commit activity
    Java 7 BSD-3-Clause 0 0 0 Updated Nov 19, 2025
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