MetaNetX SDK

Parse and process information from MetaNetX for MIRIAM compatibility using the Identifiers.org namespaces.

Install

It's as simple as:

pip install metanetx-sdk

Usage

The authoritative source on how to use the various commands is always accessible via the commands' help.

mnx-sdk -h

Normally you would start by loading the files from the MetaNetX FTP server

mnx-sdk pull ./data

and then transforming each data table.

mnx-sdk etl chem-prop ./data/chem_prop.tsv.gz ./data/transformed_chem_prop.tsv.gz

You can also directly use the functions from the metanetx_sdk.api module.

Copyright

• Copyright © 2019-2020, Moritz E. Beber.
• Free software distributed under the Apache Software License 2.0.