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Pull requests: NVIDIA/bionemo-framework

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Pull requests list

Jwilber/debug tflops esm2
#1267 opened Oct 21, 2025 by jwilber Loading…
4
add test for hf thd training
#1266 opened Oct 21, 2025 by pstjohn Loading…
3
initial peft test
#1265 opened Oct 20, 2025 by pstjohn • Draft
2
Bump 3rdparty/NeMo from 8c6fd8b to c0b8974 dependencies Pull requests that update a dependency file submodules Pull requests that update Submodules code
#1260 opened Oct 20, 2025 by dependabot bot Loading…
2
Bump 3rdparty/Megatron-LM from f8d3e2e to 572f019 dependencies Pull requests that update a dependency file submodules Pull requests that update Submodules code
#1259 opened Oct 20, 2025 by dependabot bot Loading…
2
Add gradient accumulation to ESM-2.
#1254 opened Oct 14, 2025 by cspades Loading…
1 of 9 tasks
@cspades
7
Add new geneformer configs ciflow:skip Skip all CI tests for this PR
#1251 opened Oct 13, 2025 by jwilber Loading…
@jwilber
4
updates for jonathan
#1239 opened Oct 8, 2025 by pstjohn • Draft
2
LM Eval and llama support in prediction/optimizer removal
#1238 opened Oct 8, 2025 by jstjohn Loading…
9 tasks
20
add fp8 to distributed checkpointing tests
#1236 opened Oct 8, 2025 by pstjohn Loading…
19
[WIP] Update MegatronCore + NeMo without base image update ciflow:all Run all tests (unit tests, slow tests, and notebooks) for bionemo2 or enforce running all tests
#1233 opened Oct 7, 2025 by trvachov Loading…
9 tasks
12
CI tests on multi-GPU runners ciflow:all Run all tests (unit tests, slow tests, and notebooks) for bionemo2 or enforce running all tests
#1229 opened Oct 7, 2025 by gagank1 Loading…
7 of 9 tasks
@gagank1
44
LLAMA3 SQLite Baseline with ASCII Tokenizer
#1217 opened Oct 2, 2025 by savitha-eng • Draft
9 tasks
17
[WIP] LLAMA3 Integration with BioNeMo Recipes with ASCII Tokenization/EVO2-Style Dataloader
#1205 opened Sep 29, 2025 by savitha-eng • Draft
24
[WIP] Update base dependencies ciflow:all Run all tests (unit tests, slow tests, and notebooks) for bionemo2 or enforce running all tests
#1194 opened Sep 25, 2025 by trvachov Loading…
1 of 9 tasks
13
Fix checkpoint bug bad checkpoint hydra structure
#1185 opened Sep 24, 2025 by jomitchellnv Loading…
9 tasks
5
evo2 dlsim validation [Do Not Merge]
#1181 opened Sep 23, 2025 by broland-hat • Draft
9 tasks
2
Bump rust from 1.86.0 to 1.90.0 dependencies Pull requests that update a dependency file docker Pull requests that update docker code
#1174 opened Sep 22, 2025 by dependabot bot Loading…
2
enable predict.py for llama
#1142 opened Sep 10, 2025 by yzhang123 Loading…
2 of 9 tasks
6
Geneformer: TransformerEngine checkpoint conversion
#1139 opened Sep 9, 2025 by ohadmo Loading…
9 tasks
45
[Benchmarks] update evo2 finetuning with subquadratic pckg ciflow:skip Skip all CI tests for this PR
#1131 opened Sep 8, 2025 by dorotat-nv Loading…
1 of 9 tasks
1
ESM2: TransformerEngine to HuggingFace checkpoint support
#1121 opened Sep 5, 2025 by ohadmo Loading… LHA-ready
36
Bump torch from 2.6.0a0+ecf3bae40a.nv25.01 to 2.8.0 in /models/amplify dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1116 opened Sep 5, 2025 by dependabot bot Loading…
4
Eden dataloader
#1114 opened Sep 5, 2025 by Geraldene Loading…
9 tasks
17
use gha cache for bionemo test data
#1098 opened Sep 2, 2025 by pstjohn Loading…
9
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