Update dependency jsonargparse to v4.41.0

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This PR contains the following updates:

Package	Change	Age	Confidence
jsonargparse (changelog)	==4.36.0 -> ==4.41.0

---

Release Notes

omni-us/jsonargparse (jsonargparse)

v4.41.0

Compare Source

Added
^^^^^

• Support for Python 3.14 (#&#8203;753 <https://github.com/omni-us/jsonargparse/pull/753>__).
• Support callable protocols for instance factory dependency injection (#&#8203;758 <https://github.com/omni-us/jsonargparse/pull/758>__).
• New ActionFail for arguments that should fail parsing with a given error
  message (#&#8203;759 <https://github.com/omni-us/jsonargparse/pull/759>__).
• Experimental omegaconf+ parser mode that supports variable interpolation
  and resolving across configs and command line arguments. Depending on
  community feedback, in v5.0.0 this new mode could replace the current
  omegaconf mode, introducing a breaking change (#&#8203;765 <https://github.com/omni-us/jsonargparse/pull/765>__).

Fixed
^^^^^

• Improved parameter kind handling for argument requirement determination.
  KEYWORD_ONLY parameters now correctly use --flag style (#&#8203;756 <https://github.com/omni-us/jsonargparse/pull/756>__).
• Some deprecations not shown in the API documentation (#&#8203;760 <https://github.com/omni-us/jsonargparse/pull/760>__).
• Environment variable names not shown in help for positional arguments when
  default_env is true (#&#8203;763 <https://github.com/omni-us/jsonargparse/pull/763>__).
• parse_object not parsing correctly configs (#&#8203;765 <https://github.com/omni-us/jsonargparse/pull/765>__).

Changed
^^^^^^^

• Removed support for python 3.8 (#&#8203;752 <https://github.com/omni-us/jsonargparse/pull/752>__).
• YAML comments feature is now implemented in a separate class to allow
  better support for custom help formatters without breaking the comments (#&#8203;754 <https://github.com/omni-us/jsonargparse/pull/754>__).
• Replaced unmaintained optional dependency ruyaml with ruamel.yaml
  (#&#8203;768 <https://github.com/omni-us/jsonargparse/pull/768>__).

Deprecated
^^^^^^^^^^

• DefaultHelpFormatter.*_yaml*_comment* methods are deprecated and will be
  removed in v5.0.0. This logic has been moved to a new private class
  YAMLCommentFormatter. If deemed necessary, this class might be made public
  in the future (#&#8203;754 <https://github.com/omni-us/jsonargparse/pull/754>__).
• The ruyaml optional dependency is deprecated and will be removed in
  v5.0.0. Instead use the ruamel optional dependency (#&#8203;768 <https://github.com/omni-us/jsonargparse/pull/768>__).

v4.40.2

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Fixed
^^^^^

• Subclass defaults incorrectly taken from base class (#&#8203;743 <https://github.com/omni-us/jsonargparse/pull/743>__).
• Linking entire dataclasses on instantiation not working (#&#8203;746 <https://github.com/omni-us/jsonargparse/pull/746>__).
• Introspection of postponed annotations from jax not working (#&#8203;749 <https://github.com/omni-us/jsonargparse/pull/749>__).
• without-future-annotations test not included in local coverage (#&#8203;751 <https://github.com/omni-us/jsonargparse/pull/751>__).

v4.40.1

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Fixed
^^^^^

• print_shtab incorrectly parsed from environment variable (#&#8203;726 <https://github.com/omni-us/jsonargparse/pull/726>__).
• adapt_class_type used a locally defined partial_instance wrapper
  function that is not pickleable (#&#8203;728 <https://github.com/omni-us/jsonargparse/pull/728>__).
• ArgumentParser with dashes incorrectly resolves paths to default values (#&#8203;736 <https://github.com/omni-us/jsonargparse/pull/736>__).
• Fix failing tests due to new version of typeshed-client (#&#8203;740 <https://github.com/omni-us/jsonargparse/pull/740>__).
• Require new version of docstring-parser to avoid deprecation warnings
  (#&#8203;741 <https://github.com/omni-us/jsonargparse/pull/741>__).

v4.40.0

Compare Source

Added
^^^^^

• New auto_parser function for convenience and more visibility of the
  capture_parser feature (#&#8203;721 <https://github.com/omni-us/jsonargparse/pull/721>__).

Fixed
^^^^^

• set_parsing_settings(validate_defaults=True) fails when the parser has a
  config action (#&#8203;718 <https://github.com/omni-us/jsonargparse/pull/718>__).
• Regression causing dump/save to fail when skip_link_targets=True and
  target being an entire required dataclass (#&#8203;717 <https://github.com/omni-us/jsonargparse/pull/717>__).
• TypedDict values not validated when types are forward references (#&#8203;722 <https://github.com/omni-us/jsonargparse/pull/722>__).
• Stubs-only resolver incorrectly triggered when inspect.signature available
  leading to missing parameter defaults (#&#8203;724 <https://github.com/omni-us/jsonargparse/pull/724>__).

Changed
^^^^^^^

• Use latest jsonnet release that works on all platforms and python versions
  (#&#8203;682 <https://github.com/omni-us/jsonargparse/pull/682>__).

Deprecated
^^^^^^^^^^

• LoggerProperty is deprecated and will be removed in v5.0.0. There is no
  replacement since jsonargparse is not a logging library. A similar class can
  be found in reconplogger (#&#8203;719 <https://github.com/omni-us/jsonargparse/pull/719>__).
• namespace_to_dict is deprecated and will be removed in v5.0.0. Instead use
  .clone().as_dict() or .as_dict() (#&#8203;720 <https://github.com/omni-us/jsonargparse/pull/720>__).

v4.39.0

Compare Source

Added
^^^^^

• shtab hint for positionals in bash now includes the argument name (#&#8203;699 <https://github.com/omni-us/jsonargparse/pull/699>__).
• shtab support for optionals parsed as positionals (#&#8203;700 <https://github.com/omni-us/jsonargparse/pull/700>__).
• auto_cli now supports class @property (#&#8203;701 <https://github.com/omni-us/jsonargparse/pull/701>__).
• Resolve parameters completely from stubs when inspect.signature fails
  (#&#8203;698 <https://github.com/omni-us/jsonargparse/pull/698>__).
• Option to enable validation of default values (#&#8203;711 <https://github.com/omni-us/jsonargparse/pull/711>__).
• Experimental support for custom instantiators receiving values applied by
  instantiation links (#&#8203;716 <https://github.com/omni-us/jsonargparse/pull/716>__).

Changed
^^^^^^^

• Untyped parameters with None default no longer skipped when
  fail_untyped=True (#&#8203;697 <https://github.com/omni-us/jsonargparse/pull/697>__).
• config_read_mode and docstring_parse options can now be set using
  set_parsing_settings (#&#8203;712 <https://github.com/omni-us/jsonargparse/pull/712>__).

Fixed
^^^^^

• ActionParser not updating dest of groups for instantiation (#&#8203;707 <https://github.com/omni-us/jsonargparse/pull/707>__).
• Nested generic dataclasses not working correctly (#&#8203;709 <https://github.com/omni-us/jsonargparse/pull/709>__).
• List append nested in subclass not working (#&#8203;710 <https://github.com/omni-us/jsonargparse/pull/710>__).

Deprecated
^^^^^^^^^^

• get_config_read_mode, set_config_read_mode and
  set_docstring_parse_options are deprecated and will be removed in v5.0.0.
  Instead of set_config_read_mode and set_docstring_parse_options use
  set_parsing_settings. There will be no replacement for
  get_config_read_mode since this is considered internal (#&#8203;712 <https://github.com/omni-us/jsonargparse/pull/712>__).

v4.38.0

Compare Source

Added
^^^^^

• Support shtab completion of Literal types (#&#8203;693 <https://github.com/omni-us/jsonargparse/pull/693>__).
• Support for parsing optionals as positionals (#&#8203;692 <https://github.com/omni-us/jsonargparse/pull/692>__).

Changed
^^^^^^^

• validate now checks values before required so that errors related to wrong
  level in a config are easier to understand (#&#8203;681 <https://github.com/omni-us/jsonargparse/pull/681>__).
• add_argument of a positional and providing default now raises an error
  (#&#8203;694 <https://github.com/omni-us/jsonargparse/pull/694>__).

Fixed
^^^^^

• add_class_arguments with dashes in the nested_key fail to instantiate
  (#&#8203;679 <https://github.com/omni-us/jsonargparse/pull/679>__).
• Regression parsing strings with omegaconf as the parser mode (#&#8203;686 <https://github.com/omni-us/jsonargparse/pull/686>__).
• Help incorrectly showing environment variable name for --print_shtab.
• add_argument raises error when type is assigned with action=None
  (#&#8203;687 <https://github.com/omni-us/jsonargparse/pull/687>__).
• shtab failing when parser has positional arguments (#&#8203;693 <https://github.com/omni-us/jsonargparse/pull/693>__).

v4.37.0

Compare Source

Added
^^^^^

• Experimental support for sub-classing ArgumentParser to customize
  add_argument (#&#8203;661 <https://github.com/omni-us/jsonargparse/pull/661>__).

Fixed
^^^^^

• Incorrect instantiation order when instantiation targets share a parent (#&#8203;662 <https://github.com/omni-us/jsonargparse/pull/662>__).
• Pydantic discriminated unions handled incorrectly (#&#8203;667 <https://github.com/omni-us/jsonargparse/pull/667>__).
• Failure when a link target has an undefined parent (#&#8203;668 <https://github.com/omni-us/jsonargparse/pull/668>__).
• Functions that create types now have TypeAlias return type to avoid mypy
  errors (#&#8203;671 <https://github.com/omni-us/jsonargparse/pull/671>__).
• String parsing regressions (#&#8203;673 <https://github.com/omni-us/jsonargparse/pull/673>, #&#8203;674 <https://github.com/omni-us/jsonargparse/pull/674>).
• Regression when using old CLI and inferring components from the local
  context (#&#8203;676 <https://github.com/omni-us/jsonargparse/pull/676>__).

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