cellregulondb

Python package for downloading and analysing data from the CellRegulon database.

Installation

Optional: create and activate new conda environment

mamba create -n cellregulondb "python<3.12"
mamba activate cellregulondb

Install from GitHub:

pip install git+ssh://[email protected]/Teichlab/cellregulondb.git

Example notebooks

• download and basic analysis
• network plotting

Example notebooks

This package is part of the preprint "An atlas of TF driven gene programs across human cells", Pett et al., 2025, bioRxiv https://doi.org/10.1101/2025.05.30.657075