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biocore

Collaboratively developed bioinformatics software.

123 followers
Cyberspace
http://biocore.github.io/

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gneiss gneiss Public

compositional data analysis toolbox

Jupyter Notebook 60 27

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Showing 10 of 91 repositories

microsetta-private-api Public
A private microservice to support The Microsetta Initiative

biocore/microsetta-private-api’s past year of commit activity

Python 6 BSD-3-Clause 19 63 2 Updated Oct 15, 2025
pysyndna Public
Python implementation and extension of SynDNA ("a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing", Zaramela et al., mSystems 2022

biocore/pysyndna’s past year of commit activity

Python 0 0 0 0 Updated Oct 13, 2025
emperor Public
Emperor a tool for the analysis and visualization of large microbial ecology datasets

biocore/emperor’s past year of commit activity

JavaScript 54 48 61 3 Updated Oct 14, 2025
micov Public
Aggregate genome coverage

biocore/micov’s past year of commit activity

Python 5 5 12 1 Updated Oct 12, 2025
unifrac Public

biocore/unifrac’s past year of commit activity

Python 41 BSD-3-Clause 17 10 0 Updated Oct 10, 2025
kl-metapool Public
Jupyter notebooks to assist with sample processing

biocore/kl-metapool’s past year of commit activity

Python 9 MIT 20 54 (2 issues need help) 4 Updated Oct 9, 2025
q2-conduit Public
Plugin that converts Conduit metaproteomics results into QIIME 2 artifacts usable in downstream analyses

biocore/q2-conduit’s past year of commit activity

Python 0 BSD-3-Clause 1 0 0 Updated Oct 8, 2025
microsetta-interface Public
The Microsetta participant facing user interface

biocore/microsetta-interface’s past year of commit activity

Jinja 1 BSD-3-Clause 17 44 4 Updated Sep 26, 2025
biom-format Public
The Biological Observation Matrix (BIOM) Format Project

biocore/biom-format’s past year of commit activity

Python 95 94 23 3 Updated Aug 26, 2025
unifrac-binaries Public

biocore/unifrac-binaries’s past year of commit activity

C++ 2 BSD-3-Clause 9 3 0 Updated Aug 15, 2025

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