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@datajoint

DataJoint

Open-source tools for computational data pipelines.
README.md

Welcome to DataJoint!

DataJoint for Python is an open-source framework for scientific data pipelines based on the relational data model. DataJoint prescribes a consistent method for organizing, populating, computing, and querying data.

In this GitHub Organization, you will find the source code for DataJoint, as well as tutorials and example pipelines.

Data Pipeline Example

pipeline

Yatsenko et al., bioRxiv 2021

Getting Started

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  1. datajoint-python datajoint-python Public

    Relational data pipelines for the science lab

    Python 184 90

  2. datajoint-tutorials datajoint-tutorials Public

    Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples

    Jupyter Notebook 14 153

  3. element-array-ephys element-array-ephys Public

    DataJoint Element for Neuropixels analysis with Kilosort

    Jupyter Notebook 7 40

  4. element-calcium-imaging element-calcium-imaging Public

    DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT

    Jupyter Notebook 15 48

Repositories

Showing 10 of 92 repositories
  • element-moseq Public

    DataJoint Element for Motion Sequencing with Keypoint-MoSeq

    datajoint/element-moseq’s past year of commit activity
    Jupyter Notebook 5 MIT 7 0 0 Updated Oct 15, 2025
  • anscombe-transform Public Forked from AllenNeuralDynamics/poisson-numcodecs

    Numcodecs implementation of photon conversion using poisson statistics

    datajoint/anscombe-transform’s past year of commit activity
    Python 0 MIT 10 4 2 Updated Oct 13, 2025
  • djlabhub-docker Public

    A docker image optimized for deploying to JupyterHub a JupyterLab environment with DataJoint Python.

    datajoint/djlabhub-docker’s past year of commit activity
    Python 3 6 6 2 Updated Oct 8, 2025
  • element-event Public

    DataJoint Element for event-based behavior experiments

    datajoint/element-event’s past year of commit activity
    Python 2 MIT 18 3 0 Updated Oct 3, 2025
  • datajoint-python Public

    Relational data pipelines for the science lab

    datajoint/datajoint-python’s past year of commit activity
    Python 184 LGPL-2.1 90 51 4 Updated Sep 19, 2025
  • element-array-ephys Public

    DataJoint Element for Neuropixels analysis with Kilosort

    datajoint/element-array-ephys’s past year of commit activity
    Jupyter Notebook 7 MIT 40 26 (2 issues need help) 0 Updated Sep 17, 2025
  • nginx-docker Public
    datajoint/nginx-docker’s past year of commit activity
    Python 1 5 1 1 Updated Sep 1, 2025
  • datajoint-specs Public

    DataJoint Specifications

    datajoint/datajoint-specs’s past year of commit activity
    1 CC-BY-SA-4.0 2 0 0 Updated Aug 19, 2025
  • element-interface Public

    Common functions for the DataJoint Elements

    datajoint/element-interface’s past year of commit activity
    Python 3 MIT 17 9 (1 issue needs help) 2 Updated Aug 5, 2025
  • element-miniscope Public

    DataJoint Element for miniscope calcium imaging analysis with CaImAn

    datajoint/element-miniscope’s past year of commit activity
    Jupyter Notebook 2 MIT 15 2 1 Updated Aug 4, 2025
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