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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 700 390

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 381 94

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 338 86

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 258 149

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 152 97

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 132 23

Repositories

Showing 10 of 216 repositories
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 111 MIT 13 127 (2 issues need help) 5 Updated Nov 20, 2025
  • c2py Public

    Clair/c2py low level library

    flatironinstitute/c2py’s past year of commit activity
    C++ 1 Apache-2.0 1 0 1 Updated Nov 20, 2025
  • clair Public

    Clair (Clang Introspection and Reflection) tools. A set of clang tools developed for Flatiron/CCQ

    flatironinstitute/clair’s past year of commit activity
    C++ 18 Apache-2.0 3 3 2 Updated Nov 20, 2025
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 700 GPL-2.0 390 78 (1 issue needs help) 13 Updated Nov 20, 2025
  • nixpack Public

    nix+spack = nixpack (spanix?)

    flatironinstitute/nixpack’s past year of commit activity
    Nix 48 MIT 5 1 4 Updated Nov 19, 2025
  • cppdlr Public

    Discrete Lehmann representation of imaginary time Green's functions

    flatironinstitute/cppdlr’s past year of commit activity
    C++ 12 Apache-2.0 6 1 0 Updated Nov 19, 2025
  • cryoSBI Public
    flatironinstitute/cryoSBI’s past year of commit activity
    Python 13 2 15 2 Updated Nov 19, 2025
  • figpack Public

    A Python package for creating shareable, interactive, browser-based visualizations

    flatironinstitute/figpack’s past year of commit activity
    TypeScript 11 Apache-2.0 0 3 0 Updated Nov 18, 2025
  • spack-packages Public Forked from spack/spack-packages

    Spack's community package recipes

    flatironinstitute/spack-packages’s past year of commit activity
    Python 0 Apache-2.0 452 0 0 Updated Nov 16, 2025
  • walnuts Public

    Within-orbit Adaptive Leapfrog No-U-Turn Sampler

    flatironinstitute/walnuts’s past year of commit activity
    C++ 22 MIT 1 14 (2 issues need help) 3 Updated Nov 15, 2025
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