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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 691 388

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 375 93

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 333 84

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 258 149

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 152 97

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 128 23

Repositories

Showing 10 of 212 repositories
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 60 Apache-2.0 13 44 1 Updated Oct 3, 2025
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 106 MIT 11 124 (2 issues need help) 1 Updated Oct 3, 2025
  • binderhub Public Forked from jupyterhub/binderhub

    Deterministically build docker images from a git repository + commit

    flatironinstitute/binderhub’s past year of commit activity
    Python 2 BSD-3-Clause 417 2 0 Updated Oct 2, 2025
  • figpack Public

    A Python package for creating shareable, interactive, browser-based visualizations

    flatironinstitute/figpack’s past year of commit activity
    TypeScript 7 Apache-2.0 0 3 0 Updated Oct 2, 2025
  • walnuts Public

    Within-orbit Adaptive Leapfrog No-U-Turn Sampler

    flatironinstitute/walnuts’s past year of commit activity
    C++ 18 MIT 1 14 (2 issues need help) 3 Updated Oct 2, 2025
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 691 GPL-2.0 388 73 (1 issue needs help) 11 Updated Oct 2, 2025
  • simple_ans Public

    Simple ANS (Asymmetric Numeral Systems) implementation in Python/C++

    flatironinstitute/simple_ans’s past year of commit activity
    Python 3 Apache-2.0 4 0 2 Updated Oct 2, 2025
  • jax-finufft Public

    JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library

    flatironinstitute/jax-finufft’s past year of commit activity
    Python 101 Apache-2.0 6 9 3 Updated Oct 2, 2025
  • baobzi Public

    An adaptive fast function approximator based on tree search

    flatironinstitute/baobzi’s past year of commit activity
    C++ 16 Apache-2.0 4 13 1 Updated Oct 2, 2025
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 49 Apache-2.0 1 11 2 Updated Oct 2, 2025
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