Skip to content
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 1 addition & 3 deletions planemo/galaxy/api.py
Original file line number Diff line number Diff line change
Expand Up @@ -14,8 +14,6 @@ def get_dict_from_workflow(gi: GalaxyInstance, workflow_id: str, instance: bool

def gi(port: Optional[int] = None, url: Optional[str] = None, key: Optional[str] = None) -> GalaxyInstance:
"""Return a bioblend ``GalaxyInstance`` for Galaxy on this port."""
if key is None:
key = DEFAULT_ADMIN_API_KEY
if port is not None and url is not None:
raise ValueError("Either port or url parameter needs to be None")
if port is None:
Expand Down Expand Up @@ -114,7 +112,7 @@ def summarize_history(ctx, gi, history_id):
print("|")


def get_invocations(url, key, workflow_id):
def get_invocations(url, key: Optional[str], workflow_id):
inv_gi = gi(None, url, key)
invocations = inv_gi.workflows.get_invocations(workflow_id)
return {
Expand Down
6 changes: 3 additions & 3 deletions planemo/galaxy/config.py
Original file line number Diff line number Diff line change
Expand Up @@ -641,9 +641,9 @@ def _shared_galaxy_properties(config_directory, kwds, for_tests):
def external_galaxy_config(ctx, runnables, for_tests=False, **kwds):
yield BaseGalaxyConfig(
ctx=ctx,
galaxy_url=kwds.get("galaxy_url", None),
master_api_key=_get_master_api_key(kwds),
user_api_key=kwds.get("galaxy_user_key", None),
galaxy_url=kwds.get("galaxy_url"),
master_api_key=kwds.get("galaxy_admin_key"),
user_api_key=kwds.get("galaxy_user_key"),
runnables=runnables,
kwds=kwds,
)
Expand Down
Loading