v0.2.7

Highlights

Generation of LinkML schemas by generalizing from tables in web pages

For example, given this table:

https://www.nature.com/articles/s41467-022-31626-4/tables/1

Run:

schemauto  generalize-htmltable  https://www.nature.com/articles/s41467-022-31626-4/tables/1

To get

name: example
description: example
id: https://w3id.org/example
imports:
- linkml:types
prefixes:
  linkml: https://w3id.org/linkml/
  example: https://w3id.org/example
default_prefix: example
slots:
  GWAS trait:
    examples:
    - value: "\xC2"
    range: string
  Peak GWAS SNP:
    examples:
    - value: rs2974298
    range: string
  Gene:
    examples:
    - value: SMIM19
    range: string
  NK cell cis eSNP:
    examples:
    - value: rs2974348
    range: string
  TWAS Z score:
    examples:
    - value: '3.809'
    range: string
  TWAS P value:
    examples:
    - value: '0.0001'
    range: string
classes:
  example:
    slots:
    - GWAS trait
    - Peak GWAS SNP
    - Gene
    - NK cell cis eSNP
    - TWAS Z score
    - TWAS P value

What's Changed

• Enhancing sphinx docs by @cmungall in #80
• Re committing sql_importer. by @sierra-moxon @cmungall in #82
• Added generalization using panderas by @cmungall in #84

Full Changelog: v0.2.6...v0.2.7