Bump the python-requirements group in /envs with 18 updates #23
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Bumps the python-requirements group in /envs with 18 updates: | Package | From | To | | --- | --- | --- | | [simpleitk](https://github.com/SimpleITK/SimpleITK) | `2.5.0` | `2.5.2` | | [coverage](https://github.com/nedbat/coveragepy) | `7.8.2` | `7.10.7` | | [jupyterlab](https://github.com/jupyterlab/jupyterlab) | `4.4.3` | `4.4.9` | | [matplotlib](https://github.com/matplotlib/matplotlib) | `3.10.1` | `3.10.6` | | [monai](https://github.com/Project-MONAI/MONAI) | `1.4.0` | `1.5.1` | | [pandas](https://github.com/pandas-dev/pandas) | `2.2.3` | `2.3.3` | | [plotly](https://github.com/plotly/plotly.py) | `6.1.2` | `6.3.1` | | [pre-commit](https://github.com/pre-commit/pre-commit) | `4.2.0` | `4.3.0` | | [pytest-cov](https://github.com/pytest-dev/pytest-cov) | `6.1.1` | `7.0.0` | | [pytest-mock](https://github.com/pytest-dev/pytest-mock) | `3.14.1` | `3.15.1` | | [pytest](https://github.com/pytest-dev/pytest) | `8.3.5` | `8.4.2` | | [rich](https://github.com/Textualize/rich) | `14.0.0` | `14.1.0` | | [ruff](https://github.com/astral-sh/ruff) | `0.11.12` | `0.13.3` | | [safetensors](https://github.com/huggingface/safetensors) | `0.5.3` | `0.6.2` | | [scikit-learn](https://github.com/scikit-learn/scikit-learn) | `1.6.1` | `1.7.2` | | [scipy](https://github.com/scipy/scipy) | `1.15.2` | `1.16.2` | | [timm](https://github.com/huggingface/pytorch-image-models) | `1.0.15` | `1.0.20` | | [wandb](https://github.com/wandb/wandb) | `0.19.11` | `0.22.1` | Updates `simpleitk` from 2.5.0 to 2.5.2 - [Release notes](https://github.com/SimpleITK/SimpleITK/releases) - [Commits](SimpleITK/SimpleITK@v2.5.0...v2.5.2) Updates `coverage` from 7.8.2 to 7.10.7 - [Release notes](https://github.com/nedbat/coveragepy/releases) - [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst) - [Commits](nedbat/coveragepy@7.8.2...7.10.7) Updates `jupyterlab` from 4.4.3 to 4.4.9 - [Release notes](https://github.com/jupyterlab/jupyterlab/releases) - [Changelog](https://github.com/jupyterlab/jupyterlab/blob/main/RELEASE.md) - [Commits](https://github.com/jupyterlab/jupyterlab/compare/@jupyterlab/[email protected]...@jupyterlab/[email protected]) Updates `matplotlib` from 3.10.1 to 3.10.6 - [Release notes](https://github.com/matplotlib/matplotlib/releases) - [Commits](matplotlib/matplotlib@v3.10.1...v3.10.6) Updates `monai` from 1.4.0 to 1.5.1 - [Release notes](https://github.com/Project-MONAI/MONAI/releases) - [Changelog](https://github.com/Project-MONAI/MONAI/blob/dev/CHANGELOG.md) - [Commits](Project-MONAI/MONAI@1.4.0...1.5.1) Updates `pandas` from 2.2.3 to 2.3.3 - [Release notes](https://github.com/pandas-dev/pandas/releases) - [Commits](pandas-dev/pandas@v2.2.3...v2.3.3) Updates `plotly` from 6.1.2 to 6.3.1 - [Release notes](https://github.com/plotly/plotly.py/releases) - [Changelog](https://github.com/plotly/plotly.py/blob/main/CHANGELOG.md) - [Commits](plotly/plotly.py@v6.1.2...v6.3.1) Updates `pre-commit` from 4.2.0 to 4.3.0 - [Release notes](https://github.com/pre-commit/pre-commit/releases) - [Changelog](https://github.com/pre-commit/pre-commit/blob/main/CHANGELOG.md) - [Commits](pre-commit/pre-commit@v4.2.0...v4.3.0) Updates `pytest-cov` from 6.1.1 to 7.0.0 - [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst) - [Commits](pytest-dev/pytest-cov@v6.1.1...v7.0.0) Updates `pytest-mock` from 3.14.1 to 3.15.1 - [Release notes](https://github.com/pytest-dev/pytest-mock/releases) - [Changelog](https://github.com/pytest-dev/pytest-mock/blob/main/CHANGELOG.rst) - [Commits](pytest-dev/pytest-mock@v3.14.1...v3.15.1) Updates `pytest` from 8.3.5 to 8.4.2 - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](pytest-dev/pytest@8.3.5...8.4.2) Updates `rich` from 14.0.0 to 14.1.0 - [Release notes](https://github.com/Textualize/rich/releases) - [Changelog](https://github.com/Textualize/rich/blob/master/CHANGELOG.md) - [Commits](Textualize/rich@v14.0.0...v14.1.0) Updates `ruff` from 0.11.12 to 0.13.3 - [Release notes](https://github.com/astral-sh/ruff/releases) - [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md) - [Commits](astral-sh/ruff@0.11.12...0.13.3) Updates `safetensors` from 0.5.3 to 0.6.2 - [Release notes](https://github.com/huggingface/safetensors/releases) - [Changelog](https://github.com/huggingface/safetensors/blob/main/RELEASE.md) - [Commits](huggingface/safetensors@v0.5.3...v0.6.2) Updates `scikit-learn` from 1.6.1 to 1.7.2 - [Release notes](https://github.com/scikit-learn/scikit-learn/releases) - [Commits](scikit-learn/scikit-learn@1.6.1...1.7.2) Updates `scipy` from 1.15.2 to 1.16.2 - [Release notes](https://github.com/scipy/scipy/releases) - [Commits](scipy/scipy@v1.15.2...v1.16.2) Updates `timm` from 1.0.15 to 1.0.20 - [Release notes](https://github.com/huggingface/pytorch-image-models/releases) - [Commits](huggingface/pytorch-image-models@v1.0.15...v1.0.20) Updates `wandb` from 0.19.11 to 0.22.1 - [Release notes](https://github.com/wandb/wandb/releases) - [Changelog](https://github.com/wandb/wandb/blob/main/CHANGELOG.md) - [Commits](wandb/wandb@v0.19.11...v0.22.1) --- updated-dependencies: - dependency-name: simpleitk dependency-version: 2.5.2 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-requirements - dependency-name: coverage dependency-version: 7.10.7 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: jupyterlab dependency-version: 4.4.9 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-requirements - dependency-name: matplotlib dependency-version: 3.10.6 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-requirements - dependency-name: monai dependency-version: 1.5.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: pandas dependency-version: 2.3.3 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: plotly dependency-version: 6.3.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: pre-commit dependency-version: 4.3.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: pytest-cov dependency-version: 7.0.0 dependency-type: direct:production update-type: version-update:semver-major dependency-group: python-requirements - dependency-name: pytest-mock dependency-version: 3.15.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: pytest dependency-version: 8.4.2 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: rich dependency-version: 14.1.0 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: ruff dependency-version: 0.13.3 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: safetensors dependency-version: 0.6.2 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: scikit-learn dependency-version: 1.7.2 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: scipy dependency-version: 1.16.2 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements - dependency-name: timm dependency-version: 1.0.20 dependency-type: direct:production update-type: version-update:semver-patch dependency-group: python-requirements - dependency-name: wandb dependency-version: 0.22.1 dependency-type: direct:production update-type: version-update:semver-minor dependency-group: python-requirements ... 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Bumps the python-requirements group in /envs with 18 updates:
2.5.02.5.27.8.27.10.74.4.34.4.93.10.13.10.61.4.01.5.12.2.32.3.36.1.26.3.14.2.04.3.06.1.17.0.03.14.13.15.18.3.58.4.214.0.014.1.00.11.120.13.30.5.30.6.21.6.11.7.21.15.21.16.21.0.151.0.200.19.110.22.1Updates
simpleitkfrom 2.5.0 to 2.5.2Release notes
Sourced from simpleitk's releases.
Commits
2018b6bUpdate version to 2.5.2f4f47dfMerge pull request #2319 from blowekamp/release_ITK_5_4_4392ab24Update ITK Superbuild version to 5.4.4a4c5c44Merge pull request #2306 from blowekamp/fix_docker_as756b401Fix Docker FromAsCasing error for Doxygen2f12793Merge pull request #2294 from blowekamp/image_series_reader_optionsad34faeAdd ForceOrthogonalDirection and ReverseOrder optionsUpdates
coveragefrom 7.8.2 to 7.10.7Changelog
Sourced from coverage's changelog.
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Commits
92a2af5docs: sample HTML for 7.10.7952afdadocs: prep for 7.10.7a301761build: riscv64 wheels (#2055)5daff8ddocs: now source is formatted with ruff04bbc3adocs: discuss cog in the contributing docsc181b93build: use cog --check-fail-msg to instruct devs33c4ba1chore: make upgrade0744b73chore: bump the action-dependencies group across 1 directory with 2 updates (...0d5a112perf: bulk narrowing to avoid N**2. #2048a868ed9docs: mention Python Discord on the index pageUpdates
jupyterlabfrom 4.4.3 to 4.4.9Release notes
Sourced from jupyterlab's releases.
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Commits
9a217d0[ci skip] Publish 4.4.980d2a2cBackport PR #17876: Correctly disposeTerminalManagereven if terminals are...5c06ebfBackport PR #17928: Fix scrolling to targets within notebook (#17933)a889bb5[ci skip] Publish 4.4.851c585bFix integrityf8841dcMerge commit from fork526a3d7Backport PR #17915: Ignore npmjs.com in check-links (#17921)911ff90Backport PR #17912: Debugger: Only send theconfigurationDonemessage once ...2d0ff31Backport PR #17906: Add JupyterCon banner and Jupyter colors (#17908)276b38cBackport PR #17863: Fix output prompt overlay height for large outputs (#17889)Updates
matplotlibfrom 3.10.1 to 3.10.6Release notes
Sourced from matplotlib's releases.
Commits
5cd38c3REL: v3.10.6b2358e7Release prep v3.10.62e04783Merge branch 'v3.10.5-doc' into v3.10.xd3365afGithub stats v3.10.681ed659Merge pull request #30489 from meeseeksmachine/auto-backport-of-pr-30486-on-v...5351097Merge pull request #30488 from meeseeksmachine/auto-backport-of-pr-30486-on-v...6b800b8Merge pull request #30487 from meeseeksmachine/auto-backport-of-pr-30484-on-v...25a97fdBackport PR #30486: doc: Update warnings about python-build-standalone4b79495Backport PR #30486: doc: Update warnings about python-build-standalonea55b817Backport PR #30484: FIX: be more cautious about checking widget sizeUpdates
monaifrom 1.4.0 to 1.5.1Release notes
Sourced from monai's releases.
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Changelog
Sourced from monai's changelog.
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Commits
9c6d819Release 1.5.1 Updates (#8575)9122739Removing instantiation in forward (#8580)cf5790dFix gdown fails (#8576)cf5505aDiffusion Model Encoder has an output layer set in forward method and this le...6327a86Transformers version (#8574)946cfdfPath traversal issue security fix (#8568)948fbb7Torch and Pickle Safe Load Fixes (#8566)401ea4aFix hardcoded input dim in DiffusionModelEncoder (#8514)fd13c1bCreate SECURITY.md (#8546)725c8deTorchvision pretrain fix (#8563)Updates
pandasfrom 2.2.3 to 2.3.3Release notes
Sourced from pandas's releases.
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Commits
9c8bc3eRLS: 2.3.36aa788a[backport 2.3.x] DOC: prepare 2.3.3 whatsnew notes for release (#62499) (#62508)b64f0df[backport 2.3.x] BUG: avoid validation error for ufunc with string[python] ar...058eb2b[backport 2.3.x] BUG: String[pyarrow] comparison with mixed object (#62424) (...2ca088d[backport 2.3.x] DEPR: remove the Period resampling deprecation (#62480) (#62...92bf98f[backport 2.3.x] BUG: fix .str.isdigit to honor unicode superscript for older...e57c7d6Backport PR #62452 on branch 2.3.x (TST: Adjust tests for numexpr 2.13) (#62454)e0fe9a0Backport to 2.3.x: REGR: from_records not initializing subclasses properly (#...23a1085BUG: improve future warning for boolean operations with missaligned indexes (...6113696Backport PR #62396 on branch 2.3.x (PKG/DOC: indicate Python 3.14 support in ...Updates
plotlyfrom 6.1.2 to 6.3.1Release notes
Sourced from plotly's releases.
Changelog
Sourced from plotly's changelog.
Commits
ecb00feupdate uv lockfile4e96a43version changes for v6.3.1a0de8c9Merge pull request #5361 from plotly/matplotlib-import-fix832b46cMerge branch 'main' into matplotlib-import-fixb258862Merge pull request #5180 from gmjw/secondary-y-shared2c5e2b6fix matplotlib import610b7eeMerge branch 'main' into secondary-y-sharedfbbc9d6Merge pull request #5322 from mgorny/plt-importd2af541Merge pull request #5258 from plotly/fix-default-renderer-when-ipython-installedead0c76Merge branch 'main' into plt-importUpdates
pre-commitfrom 4.2.0 to 4.3.0Release notes
Sourced from pre-commit's releases.
Changelog
Sourced from pre-commit's changelog.
Commits
b74a22dv4.3.0cc899deMerge pull request #3507 from bc-lee/dart-fix2a0bceaDowngrade Dart SDK version installed in the CIf1cc7a4Make Dart pre-commit hook compatible with the latest Dart SDKs72a3b71Merge pull request #3504 from pre-commit/pre-commit-ci-update-configc8925a4[pre-commit.ci] pre-commit autoupdatea5fe6c5Merge pull request #3496 from ericphanson/eph/jl-startup6f1f433Julia language: skip startup.jl filec681721Merge pull request #3499 from pre-commit/pre-commit-ci-update-config4fd4537[pre-commit.ci] pre-commit autoupdateUpdates
pytest-covfrom 6.1.1 to 7.0.0Changelog
Sourced from pytest-cov's changelog.
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Commits
224d896Bump version: 6.3.0 → 7.0.073424e3Cleanup the docs a bit.36f1cc2Bump pins in template.f299c59Bump the github-actions group with 2 updates25f0b2eUpdate docs/config.rstbb23eacImprove configuration docsa19531eSwitch from build/pre-commit to uv/prek - this should make this faster.82f9993Update changelog.211b5cdFix links.97aadd7Update some ci config, reformat and apply some lint fixes.Updates
pytest-mockfrom 3.14.1 to 3.15.1Release notes
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Changelog
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Commits
e1b5c62Release 3.15.1184eb19Setspy_return_iteronly when explicitly requested (#537)4fa0088[pre-commit.ci] pre-commit autoupdate (#536)f5aff33Fix test failure with pytest 8+ and verbose mode (#535)adc4187Bump actions/setup-python from 5 to 6 in the github-actions group (#533)95ad570[pre-commit.ci] pre-commit autoupdat...Description has been truncated