Skip to content

Pull requests: nextstrain/nextclade

New pull request New
19 Open 1,145 Closed
19 Open 1,145 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

feat: add "recombinant" qc metric
#1700 opened Oct 17, 2025 by ivan-aksamentov • Draft
1
5
chore(deps): bump auspice from 2.59.1 to 2.66.0 in /packages/nextclade-web dependencies Pull requests that update a dependency file javascript Pull requests that update Javascript code
#1680 opened Sep 5, 2025 by dependabot bot Loading…
perf(sort): use lookup table to speed up sequence conversion to bitpacked representation
#1649 opened Jun 9, 2025 by corneliusroemer Loading…
4
chore: switch off LTO for profiling profile
#1648 opened Jun 9, 2025 by corneliusroemer Loading…
6
Upgrade Rust version
#1604 opened Apr 27, 2025 by corneliusroemer Loading…
13
Adjust Nextclade to Auspice 2.61+
#1555 opened Nov 20, 2024 by ivan-aksamentov • Draft
5
feat(cli): add "sort-and-run" subcommand
#1439 opened Apr 18, 2024 by ivan-aksamentov • Draft
1
feat: add dataset info to output json [wip]
#1311 opened Nov 3, 2023 by ivan-aksamentov • Draft
1
feat(web): handle rust panics in wasm module gracefully [wip]
#1310 opened Nov 3, 2023 by ivan-aksamentov • Draft
1
Add dataset images
#1262 opened Sep 28, 2023 by ivan-aksamentov • Draft
1
feat: Reduce kmer spacing for short sequences
#1242 opened Aug 30, 2023 by corneliusroemer Loading…
1
feat/better seed debug logging
#1240 opened Aug 30, 2023 by corneliusroemer Loading…
5
feat: add detailed version information
#1202 opened Jul 17, 2023 by ivan-aksamentov Loading…
3
refactor: inline pieces of bio-rust crate related to FM-index
#1194 opened Jul 10, 2023 by ivan-aksamentov • Draft
1
feat: calculate composite fitness
#1008 opened Oct 3, 2022 by ivan-aksamentov • Draft
2
feat: add secondary clade-like values
#985 opened Sep 5, 2022 by ivan-aksamentov Loading…
1
6
perf(web): performance tweaks
#972 opened Aug 28, 2022 by ivan-aksamentov • Draft
3
feat: sticky tooltips
#749 opened Mar 10, 2022 by ivan-aksamentov • Draft
1
1
Add sequence view pan and zoom
#295 opened Jan 11, 2021 by ivan-aksamentov • Draft
2 of 7 tasks
1
3
ProTip! Adding no:label will show everything without a label.