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Pull requests: nf-core/tools

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Pull requests list

Tests cleanup
#3733 opened Aug 27, 2025 by edmundmiller • Draft
2
@edmundmiller
15
chore(config): migrate renovate config
#3726 opened Aug 26, 2025 by renovate bot Loading…
1
General: add pytest for get_wf_files
#3725 opened Aug 26, 2025 by mirpedrol Loading…
7
Update codecov/codecov-action digest to fdcc847
#3717 opened Aug 20, 2025 by renovate bot Loading…
1 task
2
Fix paths to logos
#3715 opened Aug 20, 2025 by maxulysse Loading…
4 tasks
2
Patch patch command
#3714 opened Aug 15, 2025 by ErikDanielsson Loading…
2 of 4 tasks
@ErikDanielsson
5
TEMPLATE - add trainling slash for pipelines_testdata_base_path
#3701 opened Aug 5, 2025 by maxulysse Loading…
4 tasks
2
Testing out Reftrace for regex replacement in modules
#3695 opened Jul 30, 2025 by ningyuxin1999 • Draft
4 tasks
2
Automatically sync the Rocrate and README content during pipelines lint
#3688 opened Jul 28, 2025 by ningyuxin1999 Loading…
4 tasks
9
Lint for version captures in modules
#3676 opened Jul 11, 2025 by edmundmiller Loading…
4 tasks
3.4.0
@edmundmiller
4
Update nf-test.yml
#3673 opened Jul 9, 2025 by maxulysse Loading…
4 tasks
8
Fix collectFile cache issue causing software version inconsistencies
#3654 opened Jul 2, 2025 by ewels • Draft
2 of 4 tasks
1
@ewels
10
Add .nf-test folder to prettierignore list
#3625 opened Jun 17, 2025 by jonasscheid Loading…
4 tasks
linting: fix type error when linting modules.json
#3611 opened Jun 11, 2025 by mashehu Loading…
1
Download pipelines with authenticated GH API calls
#3607 opened Jun 5, 2025 by jpfeuffer Loading…
1 of 4 tasks
8
Issues/3466 Move away from Gitpod
#3569 opened May 14, 2025 by JulianFlesch Loading…
2 of 4 tasks
3.4.0
@JulianFlesch
76
Document ext.args in meta yml
#3451 opened Feb 12, 2025 by awgymer Loading…
4 tasks
1
13
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3261 opened Oct 29, 2024 by Joon-Klaps • Draft
4 tasks
3.4.0
11
Create pre-commit hooks
#3141 opened Aug 26, 2024 by edmundmiller Loading…
@edmundmiller
7
Adopt pyproject.toml
#3139 opened Aug 26, 2024 by edmundmiller • Draft
@edmundmiller
3
Support version topic channels
#3093 opened Aug 1, 2024 by edmundmiller Loading…
4 tasks
@edmundmiller
5
fix the nested list bug that makes email not be delivered
#3081 opened Jul 25, 2024 by HaidYi Loading…
2 of 4 tasks
12
Add nf-core configs create sub command (attempt 2)
#3001 opened May 25, 2024 by jfy133 • Draft
1 of 9 tasks
3.4.0
1
5
Plugin to view .nextflow.log files using toolong WIP Work in progress
#2895 opened Mar 22, 2024 by ewels • Draft
2 of 4 tasks
3
Modules: Have component_files_identical check for new optional files in modules
#2816 opened Feb 29, 2024 by asp8200 Loading…
4 tasks
20
ProTip! Exclude everything labeled bug with -label:bug.