Skip to content

Conversation

julie-sullivan
Copy link
Collaborator

The CNV padding param currently has no effect. The query will be the same if you set it or not. This PR fixes the param to correctly pad the region queried.

This was code reviewed by Javi and tested in v4. However the same test fails on v5. I think this is why.

Does this method need the data release version:

https://github.com/opencb/cellbase/blob/develop/cellbase-lib/src/main/java/org/opencb/cellbase/lib/variant/annotation/VariantAnnotationCalculator.java#L1342

CellBaseDataResult<RegulatoryFeature> cellBaseDataResult = regulationManager.search(query);

if so, how do I add?

@julie-sullivan julie-sullivan self-assigned this Nov 16, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Development

Successfully merging this pull request may close these issues.

1 participant