TASK-7834 - OpenCGA start timeout with ~30 organizations -> k8s liveness and readiness probes fail #2623
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
j-coll
approved these changes
Sep 22, 2025
| organizationDBAdaptorFactory.createAllCollections(); | ||
| organizationDBAdaptorFactory.createIndexes(); | ||
| } catch (Exception e) { | ||
| logger.error("Could not create collections/indexes for Organization {}: {}", organization.getId(), e.getMessage(), e); |
There was a problem hiding this comment.
How bad would this exception be? Should we prevent the organization creation somehow if it fails?
What about a "sync" option, so this can be executed synchronously from the command line?
There was a problem hiding this comment.
I don't think we should prevent the Organization from being created if that ever happens (in almost ten years those 2 lines have never failed). In any case, you can always call manually to the cli to generate any missing indexes.
opencga-admin.sh catalog index
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
No description provided.