Orger lab B5D Implemenation

A reimplementation of B3D, but extending it to work with 5D datasets.

Corresponding publication from Bálint Balázs: http://www.biorxiv.org/content/early/2017/07/21/164624

Setup

To use:

• Clone the repo to your local computer.
• Download and install this version of the HDF5 Library.
• Run vcredist.exe from the vcredist folder in the B5D repo.
• Set the Windows Environment Variable HDF5_PLUGIN_PATH to point to where you want the .dll files in the x64/Release folder to live. Leaving them in place is fine.
• The filter code is 306. You will need to supply this to python/matlab/etc only when writing B5D compressed files
• See the original repo here for more detailed instructions.

Corresponding publication from Bálint Balázs: http://www.biorxiv.org/content/early/2017/07/21/164624

Project specific things

B5D_HDF5_plugin

• c/c++
  • general
    • additional include libraries
  • all options
    • additional include directories
      • C:\Program Files\HDF_Group\HDF5\1.10.8\lib
      • C:\Program Files\HDF_Group\HDF5\1.10.8\include
      • C:\Users\Aaron\source\repos\b5d_cuda\b5d_cuda\include\
• linker
  • general
    • additional library directories
  • input
    • addition dependencies
      • szip -> libsz
      • zlib -> libzlib
      • hdf5.lib
      • hdf5_cpp.lib
      • libhdf5_cpp.lib
      • hdf5_hl.lib
      • hdf5_hl_cpp.lib