Add Type to INFO/FORMAT sanity check. #1967
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Add a warning for incorrect Type in INFO and FORMAT in VCF header. For issue samtools#1937
daviesrob
reviewed
Nov 6, 2025
vcf.c
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| if (bcf_hdr_id2type(hdr, BCF_HL_INFO, id) != info_tags[i].type) { | ||
| hts_log_warning("%s should be declared as Type=%s", | ||
| info_tags[i].name, info_tags[i].type_str); | ||
| fmt_warned[i] = 1; |
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Should be:
Suggested change
| fmt_warned[i] = 1; | |
| info_warned[i] = 1; |
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Add a warning for incorrect Type in INFO and FORMAT in VCF header.
For issues #1937 and samtools/bcftools#2431.