Skip to content
View semenko's full-sized avatar
☕
Thoroughly Caffeinated
☕
Thoroughly Caffeinated
109 followers · 60 following

Achievements

Achievement: YOLOAchievement: QuickdrawAchievement: Mars 2020 ContributorAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Achievements

Achievement: YOLOAchievement: QuickdrawAchievement: Mars 2020 ContributorAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Highlights

Organizations

@GordonLab @ClinDesk @TheMITTech @BradnerLab @mit @Chaudhuri-Lab @mcwdsi

Block or report semenko

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don't include any personal information such as legal names or email addresses. Markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
semenko/README.md

Hi there! 👋

I'm Nick Semenkovich (semenko), a physician scientist and founding member of the Medical College of Wisconsin's Data Science Institute with a passion for software & infrastructure, information security, and clinical medicine. I spend most of my time developing deep learning models for analysis of cell-free DNA 🧬. You can also find me at https://nick.semenkovich.com.

Pinned Loading

  1. serpent-methylation-pipeline serpent-methylation-pipeline Public

    An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq samples, including cfDNA.

    Python 8 5

  2. sts-risk-calculator-cli sts-risk-calculator-cli Public

    A Python command line tool to query the Society of Thoracic Surgeons (STS) Adult Cardiac Risk Calculator API with bulk patient records.

    Python 5

  3. chrome-limit-history-lifetime chrome-limit-history-lifetime Public

    Persistent history entries are annoying. This Chrome extension limits history entries to a user-adjustable value.

    JavaScript 9 2

  4. EFForg/https-everywhere EFForg/https-everywhere Public archive

    A browser extension that encrypts your communications with many websites that offer HTTPS but still allow unencrypted connections.

    JavaScript 3.4k 1.1k

  5. chrome-force-pdf-inline chrome-force-pdf-inline Public

    A Chrome extension to force PDFs to render inline (overrides Content-Disposition: attachment).

    JavaScript 14 5

  6. mcwdsi/bam2tensor mcwdsi/bam2tensor Public

    Convert methylation data to sparse objects for machine learning.

    Python 1